Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003606A_C01 KMC003606A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189865.1| nucleic acid binding protein-like; protein id: ... 150 2e-35
ref|NP_197551.1| zinc finger protein - like; protein id: At5g205... 142 3e-33
pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana... 140 1e-32
ref|NP_197993.1| nucleic acid binding protein - like; protein id... 140 1e-32
pir||T09646 probable zinc finger protein - alfalfa (fragment) gi... 137 1e-31
>ref|NP_189865.1| nucleic acid binding protein-like; protein id: At3g42790.1,
supported by cDNA: gi_17065549 [Arabidopsis thaliana]
gi|11281497|pir||T47337 nucleic acid binding
protein-like - Arabidopsis thaliana
gi|7543887|emb|CAB87196.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|17065550|gb|AAL32929.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|21386979|gb|AAM47893.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 250
Score = 150 bits (378), Expect = 2e-35
Identities = 62/81 (76%), Positives = 70/81 (85%)
Frame = -1
Query: 590 GRQSKVSLSKDEDEGIEEQDDDEHGDALCGACGDNYGTDEFWICCDICEKWFHGKCVKIT 411
G+ SK K+EDE I+E D+D+HG+ LCGACGD+ G DEFWICCD+CEKWFHGKCVKIT
Sbjct: 169 GKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKIT 228
Query: 410 PARAEHIKQYKCPSCSNKRPR 348
PARAEHIKQYKCPSCSNKR R
Sbjct: 229 PARAEHIKQYKCPSCSNKRAR 249
>ref|NP_197551.1| zinc finger protein - like; protein id: At5g20510.1 [Arabidopsis
thaliana]
Length = 232
Score = 142 bits (358), Expect = 3e-33
Identities = 60/86 (69%), Positives = 71/86 (81%), Gaps = 8/86 (9%)
Frame = -1
Query: 581 SKVSLSKDEDEGIE--------EQDDDEHGDALCGACGDNYGTDEFWICCDICEKWFHGK 426
SK +KDE+EG+E ++D+DEHG+ LCGACGDNY +DEFWICCD+CEKWFHG+
Sbjct: 146 SKTIHAKDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGE 205
Query: 425 CVKITPARAEHIKQYKCPSCSNKRPR 348
CVKITPARAEHIK YKCP+CSNKR R
Sbjct: 206 CVKITPARAEHIKHYKCPTCSNKRAR 231
>pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana
gi|3319341|gb|AAC26230.1| similar to Medicago sativa
nucleic acid binding protein Alfin-1 (GB:L07291)
[Arabidopsis thaliana]
Length = 251
Score = 140 bits (353), Expect = 1e-32
Identities = 59/89 (66%), Positives = 70/89 (78%), Gaps = 8/89 (8%)
Frame = -1
Query: 590 GRQSKVSLSK--------DEDEGIEEQDDDEHGDALCGACGDNYGTDEFWICCDICEKWF 435
G +S+ SK +E+EG+EE+D+DE G+ CGACG++Y DEFWICCD+CE WF
Sbjct: 162 GSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWF 221
Query: 434 HGKCVKITPARAEHIKQYKCPSCSNKRPR 348
HGKCVKITPARAEHIKQYKCPSCSNKR R
Sbjct: 222 HGKCVKITPARAEHIKQYKCPSCSNKRAR 250
>ref|NP_197993.1| nucleic acid binding protein - like; protein id: At5g26210.1,
supported by cDNA: 32443. [Arabidopsis thaliana]
gi|21592780|gb|AAM64729.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 255
Score = 140 bits (353), Expect = 1e-32
Identities = 59/89 (66%), Positives = 70/89 (78%), Gaps = 8/89 (8%)
Frame = -1
Query: 590 GRQSKVSLSK--------DEDEGIEEQDDDEHGDALCGACGDNYGTDEFWICCDICEKWF 435
G +S+ SK +E+EG+EE+D+DE G+ CGACG++Y DEFWICCD+CE WF
Sbjct: 166 GSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWF 225
Query: 434 HGKCVKITPARAEHIKQYKCPSCSNKRPR 348
HGKCVKITPARAEHIKQYKCPSCSNKR R
Sbjct: 226 HGKCVKITPARAEHIKQYKCPSCSNKRAR 254
>pir||T09646 probable zinc finger protein - alfalfa (fragment)
gi|12651665|gb|AAA20093.2| Alfin-1 [Medicago sativa]
Length = 257
Score = 137 bits (345), Expect = 1e-31
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = -1
Query: 590 GRQSKVSLSKDEDEGIEEQDDDEHGDALCGACGDNYGTDEFWICCDICEKWFHGKCVKIT 411
G + + ++ D G EE++DD+ A CGACGDNYGTDEFWICCD+CEKWFHGKCVKIT
Sbjct: 175 GVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKIT 234
Query: 410 PARAEHIKQYKCPSCSNKRPR 348
PA+AEHIKQYKCP CS K+PR
Sbjct: 235 PAKAEHIKQYKCPGCSIKKPR 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,287,496
Number of Sequences: 1393205
Number of extensions: 9629176
Number of successful extensions: 45914
Number of sequences better than 10.0: 366
Number of HSP's better than 10.0 without gapping: 33896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42974
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
