Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003595A_C01 KMC003595A_c01
(410 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_558773.1| multiple sugar binding protein [Pyrobaculum aer... 31 3.2
ref|ZP_00034233.1| hypothetical protein [Burkholderia fungorum] 31 3.2
gb|EAA40127.1| GLP_80_35531_39634 [Giardia lamblia ATCC 50803] 31 4.2
pir||T18054 hypothetical protein A552R - Chlorella virus PBCV-1 30 5.4
ref|NP_048908.2| similar to Sulfolobus TATA-binding protein, cor... 30 5.4
>ref|NP_558773.1| multiple sugar binding protein [Pyrobaculum aerophilum]
gi|18159537|gb|AAL62955.1| multiple sugar binding
protein [Pyrobaculum aerophilum]
Length = 470
Score = 31.2 bits (69), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 375 LEDYQNCRNYTTNL-HGTMFPFIWEKWIHDSFRIMCTNRS 259
+E+Y+N ++Y +L HG +F +W+ + S ++ T R+
Sbjct: 391 VEEYRNAKSYVLSLTHGALFSDVWQSLMQQSIVLVQTGRA 430
>ref|ZP_00034233.1| hypothetical protein [Burkholderia fungorum]
Length = 322
Score = 31.2 bits (69), Expect = 3.2
Identities = 23/86 (26%), Positives = 39/86 (44%)
Frame = +2
Query: 77 RKKRRTWRSKKHEVPRKHGGKQNMLVLLTSSRYILHFILTISVSTKFKHIVKMN*NHSLT 256
R+++ W S PR LVLL SS + F++ + K ++V + +
Sbjct: 200 RREKLLWVSAADSSPRP--ATPYPLVLLPSSCQLQRFVVKLLDEHKVPYVVSHSASGVAG 257
Query: 257 IDLLVHMILKESCIHFSQINGNMVPC 334
+ L + L SC++ S I G +V C
Sbjct: 258 LQLALKAGLGISCLNESSIGGGVVAC 283
>gb|EAA40127.1| GLP_80_35531_39634 [Giardia lamblia ATCC 50803]
Length = 1367
Score = 30.8 bits (68), Expect = 4.2
Identities = 19/49 (38%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = +3
Query: 66 RPLKEKKEELGVQKSMKFLGSMEVNKI-CWFF*PLLDIYFISY*QSLSA 209
R LK K + ++++ LGS++VNKI F+ PL ++ FI Y +L A
Sbjct: 430 RALKAKLYPILIRRTTADLGSLDVNKITITFWIPLNEVQFILYGSALRA 478
>pir||T18054 hypothetical protein A552R - Chlorella virus PBCV-1
Length = 239
Score = 30.4 bits (67), Expect = 5.4
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 71 FKRKKRRTWRSKKHEVPRKHGGKQ-----NMLVLLTSSRYILHFILTISVSTKFKHIVKM 235
+ +K + R +H+VP KHGGK N V +T ++ F+ S+ F H +
Sbjct: 41 YSKKVQHDKRKFRHQVPIKHGGKSAKLFYNGSVHITGITNLVDFVHMTSLIASFIHEITN 100
Query: 236 N*NHSLTIDLLVHMILKESCI 298
+ D ++MI S +
Sbjct: 101 KELLMVLEDFKINMINTSSLV 121
>ref|NP_048908.2| similar to Sulfolobus TATA-binding protein, corresponds to GenBank
Accession Number S55311' [Paramecium bursaria Chlorella
virus 1] gi|11612649|gb|AAC96913.2| similar to
Sulfolobus TATA-binding protein, corresponds to GenBank
Accession Number S55311' [Paramecium bursaria Chlorella
virus 1]
Length = 270
Score = 30.4 bits (67), Expect = 5.4
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 71 FKRKKRRTWRSKKHEVPRKHGGKQ-----NMLVLLTSSRYILHFILTISVSTKFKHIVKM 235
+ +K + R +H+VP KHGGK N V +T ++ F+ S+ F H +
Sbjct: 72 YSKKVQHDKRKFRHQVPIKHGGKSAKLFYNGSVHITGITNLVDFVHMTSLIASFIHEITN 131
Query: 236 N*NHSLTIDLLVHMILKESCI 298
+ D ++MI S +
Sbjct: 132 KELLMVLEDFKINMINTSSLV 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,658,148
Number of Sequences: 1393205
Number of extensions: 6617446
Number of successful extensions: 13463
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13458
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
