Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003592A_C01 KMC003592A_c01
(420 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_608505.1| CG13693-PA [Drosophila melanogaster] gi|7296237... 33 0.83
dbj|BAA33428.1| cytohesin 1 [Mus musculus] gi|22475170|gb|AAM954... 33 1.1
ref|NP_446362.1| pleckstrin homology, Sec7 and coiled/coil domai... 33 1.1
ref|NP_035310.1| pleckstrin homology, Sec7 and coiled-coil domai... 33 1.1
dbj|BAB13511.1| cytohesin-1 [Mus musculus] 33 1.1
>ref|NP_608505.1| CG13693-PA [Drosophila melanogaster] gi|7296237|gb|AAF51528.1|
CG13693-PA [Drosophila melanogaster]
Length = 443
Score = 33.1 bits (74), Expect = 0.83
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = -2
Query: 377 ELHLIMNLTIAPAESEVRRKLDRPSQVSKA-QRYDICVGEFQAEETCPNVNTSLLIKELS 201
E +MNL E+E+R L+R +V++A Q+ + V Q T V L +L
Sbjct: 338 EKQAMMNL-----ETEMRTVLNRTDEVTRAIQKLEKEVAAVQMHNTKDYVTLDELRAQLQ 392
Query: 200 LGRNPSIPTELEKEKPS*LRNLQHKLLPNKIFVYIVELKL 81
PS+ +E+++ + + + K+L KI YI+ +KL
Sbjct: 393 DYEAPSVSEYIERKEEAHVLEKEEKMLQRKI--YILNMKL 430
>dbj|BAA33428.1| cytohesin 1 [Mus musculus] gi|22475170|gb|AAM95454.1| cytohesin 1
[Mus musculus]
Length = 397
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 9/95 (9%)
Frame = -2
Query: 407 FSINVHNVKGELHLIMNLTIAPAESEVRRKLDRPSQVSK--------AQRYDIC-VGEFQ 255
FSI V + ELH +L + A + P + K AQRY C G FQ
Sbjct: 122 FSIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQ 181
Query: 254 AEETCPNVNTSLLIKELSLGRNPSIPTELEKEKPS 150
+ +TC ++ ++++ SL NP++ K+KP+
Sbjct: 182 STDTCYVLSFAIIMLNTSL-HNPNV-----KDKPT 210
>ref|NP_446362.1| pleckstrin homology, Sec7 and coiled/coil domains 1; pleckstrin
homology, Sec7 and coiled/coil domains 1(cytohesin 1)
[Rattus norvegicus] gi|13124031|sp|P97694|CYH1_RAT
Cytohesin 1 (SEC7 homolog A) (msec7-1)
gi|1800315|gb|AAB41443.1| sec7A [Rattus norvegicus]
gi|10121081|dbj|BAB13509.1| cytohesin-1 [Mus musculus]
Length = 398
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 9/95 (9%)
Frame = -2
Query: 407 FSINVHNVKGELHLIMNLTIAPAESEVRRKLDRPSQVSK--------AQRYDIC-VGEFQ 255
FSI V + ELH +L + A + P + K AQRY C G FQ
Sbjct: 122 FSIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQ 181
Query: 254 AEETCPNVNTSLLIKELSLGRNPSIPTELEKEKPS 150
+ +TC ++ ++++ SL NP++ K+KP+
Sbjct: 182 STDTCYVLSFAIIMLNTSL-HNPNV-----KDKPT 210
>ref|NP_035310.1| pleckstrin homology, Sec7 and coiled-coil domains 1; pleckstrin
homology, Sec7 and coiled/coil domains 1; cytohesin 1
[Mus musculus] gi|13124083|sp|Q9QX11|CYH1_MOUSE
Cytohesin 1 (CLM1) gi|3834397|gb|AAC71694.1| cytohesin-1
[Mus musculus]
Length = 398
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 9/95 (9%)
Frame = -2
Query: 407 FSINVHNVKGELHLIMNLTIAPAESEVRRKLDRPSQVSK--------AQRYDIC-VGEFQ 255
FSI V + ELH +L + A + P + K AQRY C G FQ
Sbjct: 122 FSIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQ 181
Query: 254 AEETCPNVNTSLLIKELSLGRNPSIPTELEKEKPS 150
+ +TC ++ ++++ SL NP++ K+KP+
Sbjct: 182 STDTCYVLSFAIIMLNTSL-HNPNV-----KDKPT 210
>dbj|BAB13511.1| cytohesin-1 [Mus musculus]
Length = 418
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 9/95 (9%)
Frame = -2
Query: 407 FSINVHNVKGELHLIMNLTIAPAESEVRRKLDRPSQVSK--------AQRYDIC-VGEFQ 255
FSI V + ELH +L + A + P + K AQRY C G FQ
Sbjct: 122 FSIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQ 181
Query: 254 AEETCPNVNTSLLIKELSLGRNPSIPTELEKEKPS 150
+ +TC ++ ++++ SL NP++ K+KP+
Sbjct: 182 STDTCYVLSFAIIMLNTSL-HNPNV-----KDKPT 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,187,150
Number of Sequences: 1393205
Number of extensions: 6777731
Number of successful extensions: 15180
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 14902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15178
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
