Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003568A_C01 KMC003568A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175584.1| unknown protein; protein id: At1g51730.1, suppo... 86 3e-16
dbj|BAB85384.1| B1064G04.5 [Oryza sativa (japonica cultivar-grou... 66 2e-10
gb|EAA00806.1| agCP9961 [Anopheles gambiae str. PEST] 45 6e-04
ref|ZP_00065540.1| hypothetical protein [Microbulbifer degradans... 44 0.001
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 43 0.002
>ref|NP_175584.1| unknown protein; protein id: At1g51730.1, supported by cDNA:
gi_19698888 [Arabidopsis thaliana]
gi|25367214|pir||C96556 unknown protein [imported] -
Arabidopsis thaliana
gi|12321663|gb|AAG50865.1|AC025294_3 unknown protein
[Arabidopsis thaliana] gi|19698889|gb|AAL91180.1|
unknown protein [Arabidopsis thaliana]
gi|23198350|gb|AAN15702.1| unknown protein [Arabidopsis
thaliana]
Length = 252
Score = 85.5 bits (210), Expect = 3e-16
Identities = 40/59 (67%), Positives = 50/59 (83%)
Frame = -3
Query: 491 KLSGRPCFESGRAKGTAPLPEESAEEDEDDIDLDFDDEDFEDDEDDMLEHYLAEKSDSS 315
KL+GR FESGR +GT + +E +E+ED+ D+DF+DEDFEDDE+DMLEHYLAEKSDSS
Sbjct: 189 KLTGRQWFESGRGRGTVVIADEE-DEEEDEEDIDFEDEDFEDDEEDMLEHYLAEKSDSS 246
>dbj|BAB85384.1| B1064G04.5 [Oryza sativa (japonica cultivar-group)]
gi|21328090|dbj|BAC00674.1| B1144D11.21 [Oryza sativa
(japonica cultivar-group)]
Length = 296
Score = 65.9 bits (159), Expect = 2e-10
Identities = 37/61 (60%), Positives = 44/61 (71%), Gaps = 2/61 (3%)
Frame = -3
Query: 491 KLSGRPCFESGR--AKGTAPLPEESAEEDEDDIDLDFDDEDFEDDEDDMLEHYLAEKSDS 318
KLSGR FESGR KG + +E EE+ED +DFD EDF+DDE+DMLEHYLAE+S
Sbjct: 238 KLSGRQYFESGRHTMKGASTTADEEEEEEED---IDFD-EDFDDDEEDMLEHYLAEQSGK 293
Query: 317 S 315
S
Sbjct: 294 S 294
>gb|EAA00806.1| agCP9961 [Anopheles gambiae str. PEST]
Length = 828
Score = 44.7 bits (104), Expect = 6e-04
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGLPDS 489
S S+ SS SSSSSS SSSS S S SSSSSS+ SS + + P+S P S
Sbjct: 749 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASVSQPISANSRPQS 804
Score = 37.0 bits (84), Expect = 0.12
Identities = 26/54 (48%), Positives = 31/54 (57%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGLP 483
S S+ SS SSSSSS SSSS S S SSSSSS+ S + + P S +P
Sbjct: 756 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASVSQPISANSRPQSSSTVP 809
Score = 31.6 bits (70), Expect = 4.9
Identities = 21/49 (42%), Positives = 27/49 (54%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLS 468
S S+ SS SSSSSS SSSS S S +S S ++ R +PL+
Sbjct: 763 SSSSSSSSSSSSSSSSSSSSSSSSSSSASVSQPISANSRPQSSSTVPLN 811
>ref|ZP_00065540.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 798
Score = 43.9 bits (102), Expect = 0.001
Identities = 25/35 (71%), Positives = 26/35 (73%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVP 450
SS SSSSSS SSSS S S SSSSSS+ SS G VP
Sbjct: 342 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNGGVP 376
Score = 39.3 bits (90), Expect = 0.024
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGLP 483
S S+ SS SSS+SS SSSS S S SSSSSS+ SS + + S G+P
Sbjct: 323 SSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNGGVP 376
Score = 37.4 bits (85), Expect = 0.090
Identities = 22/29 (75%), Positives = 23/29 (78%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSS 432
SS SSSSSS SSSS S S SSSSSS+ SS
Sbjct: 321 SSSSSSSSSSSSSSSSTSSSSSSSSSSSS 349
Score = 37.4 bits (85), Expect = 0.090
Identities = 24/37 (64%), Positives = 26/37 (69%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSS 432
S S+ SS SSSSSS SSSS S S SSSSSS+ SS
Sbjct: 320 SSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSS 356
Score = 37.0 bits (84), Expect = 0.12
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQG 477
S S+ SS SSSS+S SSSS S S SSSSSS+ SS + + S G
Sbjct: 322 SSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNG 373
Score = 37.0 bits (84), Expect = 0.12
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +1
Query: 313 VDESDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSS 432
+ E +A SS SSSSSS SSSS S + SSSSSS+ SS
Sbjct: 309 ITEMSVAASGGSSSSSSSSSSSSSSSSSTSSSSSSSSSSS 348
Score = 37.0 bits (84), Expect = 0.12
Identities = 25/43 (58%), Positives = 28/43 (64%)
Frame = +1
Query: 304 EECVDESDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSS 432
E V S S+ SS SSSSSS SS+S S S SSSSSS+ SS
Sbjct: 311 EMSVAASGGSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSS 353
Score = 36.6 bits (83), Expect = 0.15
Identities = 25/47 (53%), Positives = 28/47 (59%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALP 462
S S+ SS SSSSSS SSSS S S SSSSSS++ G A P
Sbjct: 338 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNGGVPGNTYTATP 384
Score = 36.6 bits (83), Expect = 0.15
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSS 432
S S+ SS SSSSS+ SSSS S S SSSSSS+ SS
Sbjct: 321 SSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSSSS 357
Score = 32.7 bits (73), Expect = 2.2
Identities = 22/46 (47%), Positives = 26/46 (55%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFAL 459
S S+ SS SSSSSS SSSS S S SSS+ + A P +L
Sbjct: 342 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNGGVPGNTYTATPDSL 387
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 43.1 bits (100), Expect = 0.002
Identities = 28/53 (52%), Positives = 31/53 (57%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGL 480
S S+ SS SSSSSS SSSS S S SSSSSS+ SS + PF GL
Sbjct: 2188 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSFPFPCKAWPSGL 2240
Score = 39.3 bits (90), Expect = 0.024
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGLP 483
SS SSSSSS SSSS S S SSSSSS+ SS + + P + P
Sbjct: 2192 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSFPFPCKAWP 2237
Score = 38.9 bits (89), Expect = 0.031
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSSG 435
SS SSSSSS SSSS S S SS SSS+DS G
Sbjct: 2118 SSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2147
Score = 37.0 bits (84), Expect = 0.12
Identities = 22/29 (75%), Positives = 22/29 (75%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSS 432
SS SSSSSS SSSS S S SSSSSS SS
Sbjct: 2114 SSSSSSSSSSSSSSSSSSSSSSSSSGSSS 2142
Score = 37.0 bits (84), Expect = 0.12
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +1
Query: 346 SSISSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLS 468
SS SSSSSS SSSS S S SSSSS + SS F LS
Sbjct: 2115 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSFLCNLS 2155
Score = 35.8 bits (81), Expect = 0.26
Identities = 22/43 (51%), Positives = 25/43 (57%)
Frame = +1
Query: 355 SSSSSSKSSSSKSRSMSSSSSSADSSGRGAVPFALPLSKQGLP 483
SSSSSS SSSS S S SSSSSS+ SS + + S P
Sbjct: 2188 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSFP 2230
Score = 35.8 bits (81), Expect = 0.26
Identities = 20/26 (76%), Positives = 21/26 (79%)
Frame = +1
Query: 358 SSSSSKSSSSKSRSMSSSSSSADSSG 435
SSSSS SSSS S S SSSSSS+ SSG
Sbjct: 2114 SSSSSSSSSSSSSSSSSSSSSSSSSG 2139
Score = 35.0 bits (79), Expect = 0.45
Identities = 26/58 (44%), Positives = 29/58 (49%), Gaps = 5/58 (8%)
Frame = +1
Query: 322 SDFSAR*CSSISSSSSSKSSSSKSRSMSSSSSSADS-----SGRGAVPFALPLSKQGL 480
S S+ SS SSSSSS SSSS S SSS S S SG VP P K+ +
Sbjct: 2114 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSFLCNLSGTEEVPSPTPAPKEAV 2171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,127,318
Number of Sequences: 1393205
Number of extensions: 8302588
Number of successful extensions: 145552
Number of sequences better than 10.0: 1713
Number of HSP's better than 10.0 without gapping: 49081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98074
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
