Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003567A_C01 KMC003567A_c01
(401 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594627.1| putative exonuclease [Schizosaccharomyces pombe... 40 0.005
ref|NP_588051.1| putative ABC transporter [Schizosaccharomyces p... 40 0.009
gb|AAL24313.1| Unknown protein [Arabidopsis thaliana] 36 0.10
gb|EAA13199.1| agCP2801 [Anopheles gambiae str. PEST] 36 0.10
ref|NP_176058.1| hypothetical protein; protein id: At1g56660.1 [... 36 0.10
>ref|NP_594627.1| putative exonuclease [Schizosaccharomyces pombe]
gi|7492566|pir||T39001 probable exonuclease - fission
yeast (Schizosaccharomyces pombe)
gi|4056553|emb|CAA22588.1| putative exonuclease
[Schizosaccharomyces pombe]
Length = 623
Score = 40.4 bits (93), Expect = 0.005
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -3
Query: 360 RSVRDQGEKPKKKRKDRPKTVD---DGARDFPDGNLSEDREVKKRKKKSKSQ 214
++V GEK K KRK ++D DG +D PD N + KK+KK KSQ
Sbjct: 19 KNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQ 70
>ref|NP_588051.1| putative ABC transporter [Schizosaccharomyces pombe]
gi|7492348|pir||T41622 probable ABC transporter -
fission yeast (Schizosaccharomyces pombe)
gi|6066736|emb|CAB58409.1| putative ABC transporter
[Schizosaccharomyces pombe]
Length = 822
Score = 39.7 bits (91), Expect = 0.009
Identities = 19/43 (44%), Positives = 28/43 (64%)
Frame = -3
Query: 348 DQGEKPKKKRKDRPKTVDDGARDFPDGNLSEDREVKKRKKKSK 220
+ EK KKK+K + K+ DDG+ DG++ + KK+KKKSK
Sbjct: 144 ESSEKSKKKKK-KSKSKDDGSEALDDGDIESSEKDKKKKKKSK 185
>gb|AAL24313.1| Unknown protein [Arabidopsis thaliana]
Length = 363
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/59 (28%), Positives = 32/59 (53%)
Frame = -3
Query: 363 LRSVRDQGEKPKKKRKDRPKTVDDGARDFPDGNLSEDREVKKRKKKSKSQGKVEVVNSV 187
L+ + +GEKP+K+ + + D D ++ +E KK+K K K++ K V++ V
Sbjct: 285 LKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEV 343
>gb|EAA13199.1| agCP2801 [Anopheles gambiae str. PEST]
Length = 526
Score = 36.2 bits (82), Expect = 0.10
Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Frame = -3
Query: 342 GEKPKKKRKDRPKTVDD------GARDFPDGNLSEDREVKKRKKKSKSQGKVEVVNSV 187
GE+ KKK+K + K +D GA P D E+KK KKK K + K V+ V
Sbjct: 467 GEEKKKKKKKQKKDAEDGDGEAVGAEGQPMDQAEGDEEMKKEKKKKKKKDKNVSVDEV 524
>ref|NP_176058.1| hypothetical protein; protein id: At1g56660.1 [Arabidopsis
thaliana] gi|25404140|pir||C96608 hypothetical protein
F25P12.91 [imported] - Arabidopsis thaliana
gi|9954748|gb|AAG09099.1|AC009323_10 Unknown protein
[Arabidopsis thaliana]
Length = 522
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/59 (28%), Positives = 32/59 (53%)
Frame = -3
Query: 363 LRSVRDQGEKPKKKRKDRPKTVDDGARDFPDGNLSEDREVKKRKKKSKSQGKVEVVNSV 187
L+ + +GEKP+K+ + + D D ++ +E KK+K K K++ K V++ V
Sbjct: 285 LKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEV 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,882,272
Number of Sequences: 1393205
Number of extensions: 6573676
Number of successful extensions: 28201
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 24923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27701
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
