Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003564A_C01 KMC003564A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192830.1| putative protein; protein id: At4g10920.1, supp... 75 7e-13
dbj|BAB41214.1| putative transcriptional coactivator [Brassica r... 74 1e-12
emb|CAD10638.1| PBF68 protein [Nicotiana tabacum] 53 3e-06
dbj|BAB44036.1| P0684B02.23 [Oryza sativa (japonica cultivar-gro... 53 4e-06
dbj|BAC06947.1| putative adrenodoxin precursor [Oryza sativa (ja... 41 0.011
>ref|NP_192830.1| putative protein; protein id: At4g10920.1, supported by cDNA:
19449., supported by cDNA: gi_2997685 [Arabidopsis
thaliana] gi|25456224|pir||T52114 probable transcription
co-activator KELP [imported] - Arabidopsis thaliana
gi|2997686|gb|AAC08575.1| putative transcriptional
co-activator [Arabidopsis thaliana]
gi|3513735|gb|AAC33951.1| contains similarity to RNA
polymerase II transcription cofactor p15 [Arabidopsis
thaliana] gi|4539366|emb|CAB40060.1| putative protein
[Arabidopsis thaliana] gi|7267790|emb|CAB81193.1|
putative protein [Arabidopsis thaliana]
gi|21554027|gb|AAM63108.1| putative transcriptional
coactivator [Arabidopsis thaliana]
gi|29028806|gb|AAO64782.1| At4g10920 [Arabidopsis
thaliana]
Length = 165
Score = 75.1 bits (183), Expect = 7e-13
Identities = 32/43 (74%), Positives = 41/43 (94%)
Frame = -1
Query: 607 YYRKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIEKMDSRI 479
YY+KDGK+LPTSKGISLT+EQWSTFKK++PA E A++KM+SR+
Sbjct: 123 YYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>dbj|BAB41214.1| putative transcriptional coactivator [Brassica rapa]
Length = 165
Score = 73.9 bits (180), Expect = 1e-12
Identities = 31/43 (72%), Positives = 41/43 (95%)
Frame = -1
Query: 607 YYRKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIEKMDSRI 479
YY+KDGK+LP+SKGISLT+EQWSTFKK++PA E A++KM+SR+
Sbjct: 123 YYKKDGKELPSSKGISLTDEQWSTFKKNIPAIEAAVKKMESRV 165
>emb|CAD10638.1| PBF68 protein [Nicotiana tabacum]
Length = 594
Score = 53.1 bits (126), Expect = 3e-06
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = -1
Query: 607 YYRKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIEKMDSRIYG*ACEGSLA 449
+Y KDGK +P+S+GI+L+ +QWS+F+ S PA +AI M+ +I CE A
Sbjct: 152 FYEKDGKLVPSSRGINLSVQQWSSFRSSFPAIVEAIATMELKIRSTTCENQTA 204
>dbj|BAB44036.1| P0684B02.23 [Oryza sativa (japonica cultivar-group)]
gi|19571089|dbj|BAB86514.1| P0692C11.10 [Oryza sativa
(japonica cultivar-group)]
Length = 184
Score = 52.8 bits (125), Expect = 4e-06
Identities = 26/39 (66%), Positives = 31/39 (78%)
Frame = -1
Query: 607 YYRKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIEKM 491
YY KDGK+LP +KGISLT EQW F+ SVPA E AI+K+
Sbjct: 142 YYFKDGKELP-AKGISLTVEQWEAFRDSVPAIEDAIKKL 179
>dbj|BAC06947.1| putative adrenodoxin precursor [Oryza sativa (japonica
cultivar-group)]
Length = 249
Score = 41.2 bits (95), Expect = 0.011
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -3
Query: 455 ACMFNLPCYGHGTSWVIYADVEQYNKLEDPTDDENDI 345
AC +L C T VI DV YNKLEDPTD+END+
Sbjct: 169 ACEGSLAC---STCHVIVMDVNYYNKLEDPTDEENDM 202
Score = 39.3 bits (90), Expect = 0.040
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -1
Query: 601 RKDGKDLPTSKGISLTEEQWSTFKKSVPAKEKAIE---KMDSRIYG*ACEGSLACSTCHV 431
R DG ++ + + SVP +E + D + G ACEGSLACSTCHV
Sbjct: 123 RDDGSQSKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEG-ACEGSLACSTCHV 181
Query: 430 MVM 422
+VM
Sbjct: 182 IVM 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,814,370
Number of Sequences: 1393205
Number of extensions: 10873416
Number of successful extensions: 26325
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 25553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26320
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
