Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003557A_C01 KMC003557A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173930.1| unknown protein; protein id: At1g25682.1 [Arabi... 154 1e-36
ref|NP_110445.1| hypothetical protein MGC10471 [Homo sapiens] gi... 50 2e-05
ref|NP_611383.1| CG15084-PA [Drosophila melanogaster] gi|7302542... 38 0.081
gb|EAA29339.1| hypothetical protein [Neurospora crassa] 37 0.14
ref|NP_594041.1| putative integral membrane protein [Schizosacch... 37 0.14
>ref|NP_173930.1| unknown protein; protein id: At1g25682.1 [Arabidopsis thaliana]
gi|25403028|pir||D86386 unknown protein [imported] -
Arabidopsis thaliana
gi|12320741|gb|AAG50519.1|AC084221_1 unknown protein
[Arabidopsis thaliana]
Length = 310
Score = 154 bits (388), Expect = 1e-36
Identities = 86/128 (67%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Frame = -3
Query: 581 LNKSLRAQLRSQKKRVAEEETASRKRGLGIRLLPATEQDAATAKQVKFLTKFDKNRKDKR 402
LNK+LRAQLR +KRVAEEETASRK GLGIRLLP +E+D A VKF +KFDKNRKDKR
Sbjct: 184 LNKALRAQLRRHRKRVAEEETASRKLGLGIRLLPKSEEDIKAASNVKFKSKFDKNRKDKR 243
Query: 401 ALINSASIFPSSSSTSDKRRLELESKRRKISATAASSLLTGGLKPSSWSQGTIPS-SRQK 225
ALI+++SIFP SS +S K+R+ELE+KRRKISA +ASSLL GG K SS S T PS S+ K
Sbjct: 244 ALIHASSIFPESSYSSSKKRMELEAKRRKISAASASSLLRGGFKASSLS--TNPSASKPK 301
Query: 224 GASMTVRR 201
+S++VR+
Sbjct: 302 VSSVSVRK 309
>ref|NP_110445.1| hypothetical protein MGC10471 [Homo sapiens]
gi|12804105|gb|AAH02905.1|AAH02905 Similar to CG15084
gene product [Homo sapiens]
gi|13649459|gb|AAK37425.1|AF250306_1 putative SB115
protein [Homo sapiens]
Length = 396
Score = 50.4 bits (119), Expect = 2e-05
Identities = 43/132 (32%), Positives = 61/132 (45%), Gaps = 11/132 (8%)
Frame = -3
Query: 581 LNKSLRAQLRSQKKRVAEEETASR----KRGLGIRLLPATEQDAATAKQVKF--LTKFDK 420
LN LR + R +KK + EEE + K L I L+P TE D A +KF L ++
Sbjct: 182 LNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLAALLKFHTLDSYED 241
Query: 419 NRKDKRALINSASIFPSSSSTSDKRRL-----ELESKRRKISATAASSLLTGGLKPSSWS 255
+K KR I S S FPS+ ++ ++ +L RR +A A S + G L
Sbjct: 242 KQKLKRTEIISRSWFPSAPGSASSSKVSGVLKKLAQSRR--TALATSPITVGDLGIVRRR 299
Query: 254 QGTIPSSRQKGA 219
+P S Q A
Sbjct: 300 SRDVPESPQHAA 311
>ref|NP_611383.1| CG15084-PA [Drosophila melanogaster] gi|7302542|gb|AAF57624.1|
CG15084-PA [Drosophila melanogaster]
gi|17944202|gb|AAL47996.1| GH26994p [Drosophila
melanogaster]
Length = 316
Score = 38.1 bits (87), Expect = 0.081
Identities = 24/65 (36%), Positives = 32/65 (48%), Gaps = 4/65 (6%)
Frame = -3
Query: 578 NKSLRAQLRSQKKRVAEEETASR----KRGLGIRLLPATEQDAATAKQVKFLTKFDKNRK 411
N LRA+ R QKK + ++ R K L I LLP T QD A +K TK R+
Sbjct: 183 NSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERE 242
Query: 410 DKRAL 396
++ L
Sbjct: 243 SEQRL 247
>gb|EAA29339.1| hypothetical protein [Neurospora crassa]
Length = 404
Score = 37.4 bits (85), Expect = 0.14
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = -3
Query: 581 LNKSLRAQLRSQKKRVAEEETASRKRGLGIRLLPATEQDAATAKQVKF 438
L K+ R + ++K E + GLGI LLP TE+D A+ ++F
Sbjct: 198 LRKAFRVGRKEREKEAERTEDLRERMGLGIELLPGTEEDERRARLIEF 245
>ref|NP_594041.1| putative integral membrane protein [Schizosaccharomyces pombe]
gi|3183293|sp|P87293|YDN1_SCHPO Hypothetical protein
C16A10.01 in chromosome I gi|7492673|pir||T37766
probable integral membrane protein - fission yeast
(Schizosaccharomyces pombe) gi|2222783|emb|CAB10002.1|
putative integral membrane protein [Schizosaccharomyces
pombe]
Length = 830
Score = 37.4 bits (85), Expect = 0.14
Identities = 31/122 (25%), Positives = 56/122 (45%)
Frame = -3
Query: 575 KSLRAQLRSQKKRVAEEETASRKRGLGIRLLPATEQDAATAKQVKFLTKFDKNRKDKRAL 396
KS+R+Q RS+ V + AS + G ++ E+D A + + ++ + L
Sbjct: 107 KSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEEDGNFAS----IPELHEDNEYHSNL 162
Query: 395 INSASIFPSSSSTSDKRRLELESKRRKISATAASSLLTGGLKPSSWSQGTIPSSRQKGAS 216
S++ F SS SK ++A++A++ T P+S S+ P+S + AS
Sbjct: 163 ATSSNPFSDGSS----------SKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLAS 212
Query: 215 MT 210
T
Sbjct: 213 NT 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,622,657
Number of Sequences: 1393205
Number of extensions: 9071958
Number of successful extensions: 24115
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 23221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24077
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
