Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003555A_C02 KMC003555A_c02
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF28357.1|AF223395_1 S-ribonuclease binding protein SBP1 [Pe... 174 2e-58
ref|NP_175141.1| S-ribonuclease binding protein SBP1, putative; ... 132 1e-44
gb|AAF17669.1|AC009398_18 F20B24.9 [Arabidopsis thaliana] 85 3e-22
ref|NP_172535.1| S-ribonuclease binding protein SBP1, putative; ... 85 3e-22
pir||C96631 hypothetical protein F8A5.13 [imported] - Arabidopsi... 80 4e-22
>gb|AAF28357.1|AF223395_1 S-ribonuclease binding protein SBP1 [Petunia x hybrida]
Length = 306
Score = 174 bits (441), Expect(2) = 2e-58
Identities = 81/114 (71%), Positives = 97/114 (85%)
Frame = -2
Query: 611 VLQILRDQEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENMIAALKYNLQQAYVQ 432
V+Q LR++E EVE+INK+NMELE R EQLA+EA AWQQRA+YNEN+I LK NL+ Y Q
Sbjct: 158 VIQKLREKETEVEDINKKNMELELRTEQLALEANAWQQRAKYNENLINTLKVNLEHVYAQ 217
Query: 431 SRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMV 270
SRDSKEGCGDSEVDDTASCCNGR D HLL + +++MKE+MTCK CRVNEV+M+
Sbjct: 218 SRDSKEGCGDSEVDDTASCCNGRATDLHLLCRDSNEMKELMTCKVCRVNEVSML 271
Score = 73.6 bits (179), Expect(2) = 2e-58
Identities = 29/35 (82%), Positives = 34/35 (96%)
Frame = -3
Query: 268 LLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVFM 164
LLPCKHLCLCK+CESKLS CPLCQS+K+IGME++M
Sbjct: 272 LLPCKHLCLCKECESKLSLCPLCQSTKYIGMEIYM 306
>ref|NP_175141.1| S-ribonuclease binding protein SBP1, putative; protein id:
At1g45976.1, supported by cDNA: gi_11692935, supported
by cDNA: gi_11993870, supported by cDNA: gi_13194827,
supported by cDNA: gi_17979238, supported by cDNA:
gi_20147308 [Arabidopsis thaliana]
gi|25405174|pir||B96511 probable S-ribonuclease binding
protein SBP1 [imported] - Arabidopsis thaliana
gi|11692936|gb|AAG40071.1|AF324720_1 F2G19.2
[Arabidopsis thaliana]
gi|11993871|gb|AAG42919.1|AF329502_1 putative
S-ribonuclease binding protein SBP1 [Arabidopsis
thaliana] gi|12321008|gb|AAG50626.1|AC083835_11
S-ribonuclease binding protein SBP1, putative
[Arabidopsis thaliana]
gi|13194828|gb|AAK15576.1|AF349529_1 putative
S-ribonuclease binding protein SBP1 [Arabidopsis
thaliana] gi|17979239|gb|AAL49936.1| F2G19.22/F2G19.22
[Arabidopsis thaliana] gi|20147309|gb|AAM10368.1|
F2G19.22/F2G19.22 [Arabidopsis thaliana]
Length = 325
Score = 132 bits (331), Expect(2) = 1e-44
Identities = 67/114 (58%), Positives = 83/114 (72%)
Frame = -2
Query: 611 VLQILRDQEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENMIAALKYNLQQAYVQ 432
V+Q LR+++ E+E IN++N ELE RMEQL +EA AWQQRA+YNENMIAAL YNL +A +
Sbjct: 184 VVQKLREKDEELERINRKNKELEVRMEQLTMEAEAWQQRAKYNENMIAALNYNLDRAQGR 243
Query: 431 SRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMV 270
RDS EGCGDSEVDDTASC NGR N++ K MM C+ C V E+ M+
Sbjct: 244 PRDSIEGCGDSEVDDTASCFNGR-------DNSNNNTKTMMMCRFCGVREMCML 290
Score = 70.1 bits (170), Expect(2) = 1e-44
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -3
Query: 268 LLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVFM 164
LLPC H+CLCK+CE KLS CPLCQSSKF+GMEV+M
Sbjct: 291 LLPCNHMCLCKECERKLSSCPLCQSSKFLGMEVYM 325
>gb|AAF17669.1|AC009398_18 F20B24.9 [Arabidopsis thaliana]
Length = 368
Score = 85.1 bits (209), Expect(2) = 3e-22
Identities = 45/119 (37%), Positives = 73/119 (60%), Gaps = 7/119 (5%)
Frame = -2
Query: 599 LRDQEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENMIAALKYNLQQAYVQSR-- 426
L++++ E+ ++NK+N EL +R++Q+A+EA W RA+YNE+++ LK NLQQA +
Sbjct: 220 LQEKDHEINDMNKKNKELVERIKQVAMEAQNWHYRAKYNESVVNVLKANLQQAMSHNNSV 279
Query: 425 -----DSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMVSI 264
KEG GDSE+DD AS +D + + N + + M CK C V EV+++ +
Sbjct: 280 IAAADQGKEGFGDSEIDDAAS----SYIDPNNNNNNNMGIHQRMRCKMCNVKEVSVLIV 334
Score = 42.0 bits (97), Expect(2) = 3e-22
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -3
Query: 268 LLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVF 167
++PC+HL LCK+C+ CP+C+S K ++VF
Sbjct: 333 IVPCRHLSLCKECDVFTKICPVCKSLKSSCVQVF 366
>ref|NP_172535.1| S-ribonuclease binding protein SBP1, putative; protein id:
At1g10650.1, supported by cDNA: 108776. [Arabidopsis
thaliana] gi|27754499|gb|AAO22697.1| putative
S-ribonuclease binding protein SBP1 [Arabidopsis
thaliana] gi|28393981|gb|AAO42398.1| putative
S-ribonuclease binding protein SBP1 [Arabidopsis
thaliana]
Length = 339
Score = 85.1 bits (209), Expect(2) = 3e-22
Identities = 45/119 (37%), Positives = 73/119 (60%), Gaps = 7/119 (5%)
Frame = -2
Query: 599 LRDQEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENMIAALKYNLQQAYVQSR-- 426
L++++ E+ ++NK+N EL +R++Q+A+EA W RA+YNE+++ LK NLQQA +
Sbjct: 191 LQEKDHEINDMNKKNKELVERIKQVAMEAQNWHYRAKYNESVVNVLKANLQQAMSHNNSV 250
Query: 425 -----DSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMVSI 264
KEG GDSE+DD AS +D + + N + + M CK C V EV+++ +
Sbjct: 251 IAAADQGKEGFGDSEIDDAAS----SYIDPNNNNNNNMGIHQRMRCKMCNVKEVSVLIV 305
Score = 42.0 bits (97), Expect(2) = 3e-22
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -3
Query: 268 LLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVF 167
++PC+HL LCK+C+ CP+C+S K ++VF
Sbjct: 304 IVPCRHLSLCKECDVFTKICPVCKSLKSSCVQVF 337
>pir||C96631 hypothetical protein F8A5.13 [imported] - Arabidopsis thaliana
gi|2462754|gb|AAB71973.1| Unknown protein [Arabidopsis
thaliana]
Length = 372
Score = 79.7 bits (195), Expect(2) = 4e-22
Identities = 46/125 (36%), Positives = 72/125 (56%), Gaps = 13/125 (10%)
Frame = -2
Query: 599 LRDQEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENMIAALKYNLQQAYVQSRDS 420
L++++ E+E++NK+N EL D+++Q+AVEA W +A+YNE+++ ALK NLQQ D+
Sbjct: 222 LQEKDHEIESMNKKNRELVDKIKQVAVEAQNWHYKAKYNESVVNALKVNLQQVMSHGNDN 281
Query: 419 -------------KEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEV 279
KEG GDSE+DD A+ N + + S G M CK C V V
Sbjct: 282 NAVGGGVADHHQMKEGFGDSEIDDEAASYNYLNIP-GMPSTG-------MRCKLCNVKNV 333
Query: 278 TMVSI 264
+++ +
Sbjct: 334 SVLLV 338
Score = 46.6 bits (109), Expect(2) = 4e-22
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -3
Query: 268 LLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVF 167
L+PC+HL LCKDC+ CP+CQS K ++VF
Sbjct: 337 LVPCRHLSLCKDCDVFTGVCPVCQSLKTSSVQVF 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,819,243
Number of Sequences: 1393205
Number of extensions: 10159843
Number of successful extensions: 31006
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 29566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30957
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
