Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003552A_C01 KMC003552A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SEE4|PIRL_LYCES Pirin-like protein gi|6651245|gb|AAF22236.1... 155 3e-37
sp|Q9ZW82|PIR2_ARATH Pirin-like protein At2g43120 gi|25408839|pi... 141 6e-33
ref|NP_030851.1| similar to pirin-like protein; protein id: At2g... 141 6e-33
ref|NP_191485.1| pirin-like protein; protein id: At3g59260.1 [Ar... 132 3e-30
ref|NP_191481.1| pirin-like protein; protein id: At3g59220.1, su... 122 5e-27
>sp|Q9SEE4|PIRL_LYCES Pirin-like protein gi|6651245|gb|AAF22236.1|AF154003_1 pirin
[Lycopersicon esculentum]
Length = 291
Score = 155 bits (393), Expect = 3e-37
Identities = 71/104 (68%), Positives = 83/104 (79%)
Frame = -1
Query: 626 HQSIPESWNSFVYVFEGEGVFGSPSSSPTMPYHVLVLSLGDGLSVWNNSSKPLKFVLIGG 447
HQ IPE+WN+F+Y+ EGEG FGS S+ T +H LVL G+GLSVWN SSKPL+FVLIGG
Sbjct: 188 HQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFVLIGG 247
Query: 446 QPINEPVVQYGPFVMNTQSEIEKTLEDYQYGKNGFEMRNNWRSQ 315
QPINEPVVQYGPFVMNT+SEI + +DYQ GKNGFE W S+
Sbjct: 248 QPINEPVVQYGPFVMNTKSEIMQAYQDYQLGKNGFERSRQWYSK 291
>sp|Q9ZW82|PIR2_ARATH Pirin-like protein At2g43120 gi|25408839|pir||C84862 probable
probable pirin protein [imported] - Arabidopsis thaliana
Length = 270
Score = 141 bits (356), Expect = 6e-33
Identities = 70/109 (64%), Positives = 84/109 (76%), Gaps = 5/109 (4%)
Frame = -1
Query: 626 HQSIPESWNSFVYVFE---GEGVFGSPSSSPTMPYHVLVLSLG-DGLSVWN-NSSKPLKF 462
HQ++PESWN+F Y+ E G GVF S +SSP + V+V G DG+SVWN +SSK L+F
Sbjct: 162 HQNVPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGNDGVSVWNKSSSKQLRF 221
Query: 461 VLIGGQPINEPVVQYGPFVMNTQSEIEKTLEDYQYGKNGFEMRNNWRSQ 315
VLI G+PI EPVVQYGPFVMNTQ+EI+ T+EDY YGKNGFEM WRSQ
Sbjct: 222 VLIAGEPIGEPVVQYGPFVMNTQAEIDMTIEDYHYGKNGFEMAKYWRSQ 270
>ref|NP_030851.1| similar to pirin-like protein; protein id: At2g43120.1 [Arabidopsis
thaliana]
Length = 297
Score = 141 bits (356), Expect = 6e-33
Identities = 70/109 (64%), Positives = 84/109 (76%), Gaps = 5/109 (4%)
Frame = -1
Query: 626 HQSIPESWNSFVYVFE---GEGVFGSPSSSPTMPYHVLVLSLG-DGLSVWN-NSSKPLKF 462
HQ++PESWN+F Y+ E G GVF S +SSP + V+V G DG+SVWN +SSK L+F
Sbjct: 189 HQNVPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGNDGVSVWNKSSSKQLRF 248
Query: 461 VLIGGQPINEPVVQYGPFVMNTQSEIEKTLEDYQYGKNGFEMRNNWRSQ 315
VLI G+PI EPVVQYGPFVMNTQ+EI+ T+EDY YGKNGFEM WRSQ
Sbjct: 249 VLIAGEPIGEPVVQYGPFVMNTQAEIDMTIEDYHYGKNGFEMAKYWRSQ 297
>ref|NP_191485.1| pirin-like protein; protein id: At3g59260.1 [Arabidopsis thaliana]
gi|14195010|sp|Q9LX45|PIR4_ARATH Pirin-like protein
At3g59260 gi|11358623|pir||T48994 pirin-like protein -
Arabidopsis thaliana gi|7801676|emb|CAB91596.1|
pirin-like protein [Arabidopsis thaliana]
Length = 271
Score = 132 bits (333), Expect = 3e-30
Identities = 62/106 (58%), Positives = 80/106 (74%), Gaps = 2/106 (1%)
Frame = -1
Query: 626 HQSIPESWNSFVYVFEG-EGVFGSPSSSPTMPYHVLVLSLGDGLSVWNNS-SKPLKFVLI 453
HQ++PESW +F Y+ EG EGVF S SS ++V+V GD +SVWN S S+PL+F+LI
Sbjct: 166 HQAVPESWTAFAYIVEGDEGVFSSSDSSTVQAHNVVVFGTGDEVSVWNTSNSRPLRFLLI 225
Query: 452 GGQPINEPVVQYGPFVMNTQSEIEKTLEDYQYGKNGFEMRNNWRSQ 315
G+PI EPVVQ+GPFVMN+Q EIE T+ DY+ G NGFEM +WRS+
Sbjct: 226 AGEPIGEPVVQHGPFVMNSQDEIEMTIGDYRNGMNGFEMAKHWRSE 271
>ref|NP_191481.1| pirin-like protein; protein id: At3g59220.1, supported by cDNA:
gi_19070662 [Arabidopsis thaliana]
gi|14195011|sp|Q9LX49|PIR3_ARATH Pirin-like protein
At3g59220 gi|11358622|pir||T48990 pirin-like protein -
Arabidopsis thaliana gi|7801672|emb|CAB91592.1|
pirin-like protein [Arabidopsis thaliana]
gi|19070663|gb|AAL83949.1|AF353716_1 pirin [Arabidopsis
thaliana]
Length = 287
Score = 122 bits (305), Expect = 5e-27
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Frame = -1
Query: 626 HQSIPESWNSFVYVFEG-EGVFGSPSSSPTMPYHVLVLSLGDGLSVWNNS-SKPLKFVLI 453
HQ++PESW +F Y+ EG EGVFGS +SS +HV+V GD +SVWN S S+ L+F+LI
Sbjct: 186 HQTVPESWTAFAYIIEGDEGVFGSLNSSAISAHHVVVFGPGDLVSVWNKSTSRSLRFLLI 245
Query: 452 GGQPINEPVVQYGPFVMNTQSEIEKTLEDYQYGKNGFEM 336
G+PI EPVVQ GPFVMN+Q+EI+ +DYQ KNGFEM
Sbjct: 246 AGEPIGEPVVQCGPFVMNSQAEIDMAFDDYQNAKNGFEM 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,146,479
Number of Sequences: 1393205
Number of extensions: 11461260
Number of successful extensions: 32740
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 31668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32693
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
