Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003542A_C02 KMC003542A_c02
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA60946.1| ORF YJR83.19 [Saccharomyces cerevisiae] 34 1.2
ref|XP_219279.1| similar to hypothetical protein [Macaca fascicu... 33 2.0
ref|NP_573504.1| megalencephalic leukoencephalopathy with subcor... 33 2.6
dbj|BAC65472.1| mKIAA0027 protein [Mus musculus] 33 2.6
dbj|BAC31643.1| unnamed protein product [Mus musculus] 33 2.6
>emb|CAA60946.1| ORF YJR83.19 [Saccharomyces cerevisiae]
Length = 132
Score = 34.3 bits (77), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 165 VIMSFKLLLLLLFLALLLKSFNIFPLFYTTKGCETFLHWICSFILINIL*F 13
+++ LLLLLL L LLL + L+Y TF H CSF ++ ++ F
Sbjct: 4 ILLYMVLLLLLLLLLLLLLLLLLLQLYYFVFDSYTFSHITCSFSILFLVSF 54
>ref|XP_219279.1| similar to hypothetical protein [Macaca fascicularis] [Rattus
norvegicus]
Length = 566
Score = 33.5 bits (75), Expect = 2.0
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = -3
Query: 220 VLFSISCCQVLSSCAKK------TCYYVL*IIVVAFVFGFIA*IL*YIPPFLYNEGV*NF 59
++F ISCC +L T Y++L +++ +FG+ A L Y+ FL+++ + +
Sbjct: 44 IIFFISCCFLLVMFKYYKIDIYVTDYHILETMLILILFGWSAIPLTYLMSFLFSKSIPAY 103
Query: 58 FALDLFFYFN*HTIILI 8
L +F+Y + + +LI
Sbjct: 104 IQLLVFYYLSGTSGLLI 120
>ref|NP_573504.1| megalencephalic leukoencephalopathy with subcortical cysts 1;
megalencephalic leukoencephalopathy with subcortical
cysts 1 (human); expressed sequence AW048630; expressed
sequence BB074274 [Mus musculus]
gi|18251450|gb|AAL66020.1|AF449425_1 KIAA0027 protein
[Mus musculus] gi|19353709|gb|AAH24719.1| KIAA0027
hypothetical protein (human) [Mus musculus]
gi|26326395|dbj|BAC26941.1| unnamed protein product [Mus
musculus]
Length = 382
Score = 33.1 bits (74), Expect = 2.6
Identities = 19/39 (48%), Positives = 26/39 (65%)
Frame = -1
Query: 225 YMSFFRFRVVKCYQVVPKKPVIMSFKLLLLLLFLALLLK 109
Y+SF RVV+ ++ P P I S+ +LLLLL L LLL+
Sbjct: 284 YLSFSVMRVVEIFKDYP--PAIKSYDVLLLLLLLLLLLQ 320
>dbj|BAC65472.1| mKIAA0027 protein [Mus musculus]
Length = 423
Score = 33.1 bits (74), Expect = 2.6
Identities = 19/39 (48%), Positives = 26/39 (65%)
Frame = -1
Query: 225 YMSFFRFRVVKCYQVVPKKPVIMSFKLLLLLLFLALLLK 109
Y+SF RVV+ ++ P P I S+ +LLLLL L LLL+
Sbjct: 325 YLSFSVMRVVEIFKDYP--PAIKSYDVLLLLLLLLLLLQ 361
>dbj|BAC31643.1| unnamed protein product [Mus musculus]
Length = 382
Score = 33.1 bits (74), Expect = 2.6
Identities = 19/39 (48%), Positives = 26/39 (65%)
Frame = -1
Query: 225 YMSFFRFRVVKCYQVVPKKPVIMSFKLLLLLLFLALLLK 109
Y+SF RVV+ ++ P P I S+ +LLLLL L LLL+
Sbjct: 284 YLSFSVMRVVEIFKDYP--PAIKSYDVLLLLLLLLLLLQ 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,162,356
Number of Sequences: 1393205
Number of extensions: 10330800
Number of successful extensions: 29656
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29532
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
