Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003540A_C01 KMC003540A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_007116.1|ND4_10504 NADH dehydrogenase subunit 4 [Artemia ... 33 1.1
ref|NP_704178.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.2
gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical pr... 31 3.2
ref|NP_792612.1| GGDEF domain protein [Pseudomonas syringae pv. ... 30 9.2
pir||S31123 hypothetical protein F59B2.2 - Caenorhabditis elegans 30 9.2
>ref|NP_007116.1|ND4_10504 NADH dehydrogenase subunit 4 [Artemia franciscana]
gi|3122489|sp|Q37711|NU4M_ARTSF NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 gi|2147763|pir||S60646 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - brine
shrimp mitochondrion gi|578445|emb|CAA48814.1| NADH
dehydrogenase (ubiquinone) [Artemia franciscana]
Length = 386
Score = 32.7 bits (73), Expect = 1.1
Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 4/61 (6%)
Frame = +2
Query: 113 AHYYILG*IILTPHPLMFVIIALTSHLLFKQTQITFWKHSTD----LLRCLSLLH*PPIR 280
A YY L +L+ PL+F+IIA TS ++ + + FW + D LL LS L P+
Sbjct: 91 ASYYFLFYTLLSSLPLLFIIIAHTS--IYSSSFLQFWGNFMDKMIFLLAILSFLVKLPVY 148
Query: 281 F 283
F
Sbjct: 149 F 149
>ref|NP_704178.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498916|emb|CAD50994.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2041
Score = 31.2 bits (69), Expect = 3.2
Identities = 10/22 (45%), Positives = 17/22 (76%)
Frame = +3
Query: 3 NNQYSSVNESKHTIVSRRDYLY 68
N+QY +N++ H++V R+ YLY
Sbjct: 827 NDQYDKINKNYHSVVERKSYLY 848
>gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 803
Score = 31.2 bits (69), Expect = 3.2
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Frame = +3
Query: 3 NNQYSSVNE------SKHTIVSRRDYLYYKLSNSTIIKVI 104
NNQYSS+ E ++HTI+ ++ K+SN TIIK I
Sbjct: 488 NNQYSSIIEKLLIIINEHTILIKQLVQQIKISNDTIIKEI 527
>ref|NP_792612.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|28853238|gb|AAO56307.1| GGDEF domain protein
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 385
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 137 IILTPH---PLMFVIIALTSHLLFKQTQITFWKHSTDLLRCLSLLH*PPIRFIITLNIIL 307
+I PH +M + A LFK T FW H T ++ +H + ITL+I +
Sbjct: 24 VIPNPHLRENVMMTLQAEDRSQLFKDTAAQFWTHITPMVYLALGIHCVLLAVFITLDITI 83
Query: 308 LF 313
L+
Sbjct: 84 LW 85
>pir||S31123 hypothetical protein F59B2.2 - Caenorhabditis elegans
Length = 389
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/73 (24%), Positives = 33/73 (44%)
Frame = -1
Query: 411 YRENCFYLPRFVNIALISPLFYQIHWPPSHII*NNRMMFSVIINLMGGQCNNDKHRRRSV 232
+ CF LP FVN+ + LFYQ+ I+ + ++NL+G +H++ +
Sbjct: 51 FNAGCFSLPYFVNVTI---LFYQLGMCSVAIL----FISDNLVNLVGDHLGGTRHQQMIL 103
Query: 231 ECFQKVICVCLNN 193
+ + L N
Sbjct: 104 MATVSLFFILLTN 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,620,174
Number of Sequences: 1393205
Number of extensions: 6853697
Number of successful extensions: 13225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13221
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
