Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003537A_C01 KMC003537A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis ... 135 3e-31
ref|NP_565200.1| expressed protein; protein id: At1g79110.1, sup... 135 3e-31
pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thali... 135 3e-31
ref|NP_566438.1| expressed protein; protein id: At3g12920.1, sup... 133 2e-30
gb|AAL32681.1| putative protein [Arabidopsis thaliana] gi|213871... 130 8e-30
>gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis thaliana]
Length = 358
Score = 135 bits (340), Expect = 3e-31
Identities = 79/162 (48%), Positives = 95/162 (57%), Gaps = 18/162 (11%)
Frame = -3
Query: 535 MKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISLRSDLEQVLAHVSDS 356
++ K++E +++ KVN L ERV SL ENQIWR+LAQ +EA LR++LE VLA V D
Sbjct: 197 LRVKEEERERIGKVNHALEERVKSLSIENQIWRDLAQTNEATANHLRTNLEHVLAQVKDV 256
Query: 355 HRGAAAE----EEDDAESSCGSNHHREEEEEENEAVG--------------NLCRECGAQ 230
RGA E EEDDAES CGS+ EE VG +CR CG +
Sbjct: 257 SRGAGLEKNMNEEDDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEE 316
Query: 229 ESGVLLLPCRHLCL*YDVWVQPIRNCPLCHSAINASVHVNFS 104
ES VLLLPCRHLCL V + CP+C S NASVHVN S
Sbjct: 317 ESCVLLLPCRHLCL-CGVCGSSVHTCPICTSPKNASVHVNMS 357
>ref|NP_565200.1| expressed protein; protein id: At1g79110.1, supported by cDNA:
36412. [Arabidopsis thaliana]
Length = 358
Score = 135 bits (340), Expect = 3e-31
Identities = 79/162 (48%), Positives = 95/162 (57%), Gaps = 18/162 (11%)
Frame = -3
Query: 535 MKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISLRSDLEQVLAHVSDS 356
++ K++E +++ KVN L ERV SL ENQIWR+LAQ +EA LR++LE VLA V D
Sbjct: 197 LRVKEEERERIGKVNHALEERVKSLSIENQIWRDLAQTNEATANHLRTNLEHVLAQVKDV 256
Query: 355 HRGAAAE----EEDDAESSCGSNHHREEEEEENEAVG--------------NLCRECGAQ 230
RGA E EEDDAES CGS+ EE VG +CR CG +
Sbjct: 257 SRGAGLEKNMNEEDDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEE 316
Query: 229 ESGVLLLPCRHLCL*YDVWVQPIRNCPLCHSAINASVHVNFS 104
ES VLLLPCRHLCL V + CP+C S NASVHVN S
Sbjct: 317 ESCVLLLPCRHLCL-CGVCGSSVHTCPICTSPKNASVHVNMS 357
>pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thaliana
gi|3152583|gb|AAC17064.1| Contains similarity to
inhibitor of apoptosis protein gb|U45881 from D.
melanogaster. [Arabidopsis thaliana]
Length = 347
Score = 135 bits (340), Expect = 3e-31
Identities = 79/162 (48%), Positives = 95/162 (57%), Gaps = 18/162 (11%)
Frame = -3
Query: 535 MKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISLRSDLEQVLAHVSDS 356
++ K++E +++ KVN L ERV SL ENQIWR+LAQ +EA LR++LE VLA V D
Sbjct: 186 LRVKEEERERIGKVNHALEERVKSLSIENQIWRDLAQTNEATANHLRTNLEHVLAQVKDV 245
Query: 355 HRGAAAE----EEDDAESSCGSNHHREEEEEENEAVG--------------NLCRECGAQ 230
RGA E EEDDAES CGS+ EE VG +CR CG +
Sbjct: 246 SRGAGLEKNMNEEDDAESCCGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEE 305
Query: 229 ESGVLLLPCRHLCL*YDVWVQPIRNCPLCHSAINASVHVNFS 104
ES VLLLPCRHLCL V + CP+C S NASVHVN S
Sbjct: 306 ESCVLLLPCRHLCL-CGVCGSSVHTCPICTSPKNASVHVNMS 346
>ref|NP_566438.1| expressed protein; protein id: At3g12920.1, supported by cDNA: 924.
[Arabidopsis thaliana] gi|15795121|dbj|BAB02499.1|
gene_id:MGH6.3~unknown protein [Arabidopsis thaliana]
gi|26451940|dbj|BAC43062.1| unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 133 bits (334), Expect = 2e-30
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 13/157 (8%)
Frame = -3
Query: 535 MKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISLRSDLEQVLAHVSDS 356
++ KDDEI + K+N L E+V SLC ENQIWR++AQ++EA V +LRS+L+QVLA V +
Sbjct: 179 LRAKDDEINHIGKLNLFLEEKVKSLCVENQIWRDVAQSNEATVNALRSNLQQVLAAVERN 238
Query: 355 HRGAAAEEEDDAESSCGSNHHREEEEEENEAVG-------------NLCRECGAQESGVL 215
DDA+S CGSN + EEE + G ++CR CG E+ VL
Sbjct: 239 RWEEPPTVADDAQSCCGSNDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVL 298
Query: 214 LLPCRHLCL*YDVWVQPIRNCPLCHSAINASVHVNFS 104
LLPCRH+CL V + CP+C S AS+HVN S
Sbjct: 299 LLPCRHMCL-CSVCGSSLNTCPICKSPKTASLHVNLS 334
>gb|AAL32681.1| putative protein [Arabidopsis thaliana] gi|21387161|gb|AAM47984.1|
putative protein [Arabidopsis thaliana]
Length = 303
Score = 130 bits (328), Expect = 8e-30
Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Frame = -3
Query: 535 MKEKDDEIQKLAKVNFVLHERVNSLCEENQIWRELAQAHEAAVISLRSDLEQVLAHVSDS 356
+KEKDDEI ++ +N+VL ERV SL ENQIWR++AQ +EA +LR++L+QVLA + ++
Sbjct: 160 LKEKDDEIVRIRNLNWVLQERVKSLYVENQIWRDIAQTNEANANTLRTNLDQVLAQL-ET 218
Query: 355 HRGAAAEEEDDAESSCGSNHHREEEEEENEAVGNLCRECGAQESGVLLLPCRHLCL*YDV 176
A+A EDDAESSCGS + E AVG C+ CG +E+ VL+LPCRHLCL
Sbjct: 219 FPTASAVVEDDAESSCGS-CCGDGGGEAVTAVGGGCKRCGEREASVLVLPCRHLCLCTVC 277
Query: 175 WVQP-IRNCPLCHSAINASVHVNFS 104
+R CP+C +NASVHVN S
Sbjct: 278 GGSALLRTCPVCDMVMNASVHVNMS 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,940,113
Number of Sequences: 1393205
Number of extensions: 14622145
Number of successful extensions: 146537
Number of sequences better than 10.0: 2133
Number of HSP's better than 10.0 without gapping: 71312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112270
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
