Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003535A_C01 KMC003535A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180599.1| unknown protein; protein id: At2g30400.1 [Arabi... 101 4e-21
ref|NP_195804.1| putative protein; protein id: At5g01840.1 [Arab... 99 2e-20
ref|NP_172174.1| hypothetical protein; protein id: At1g06920.1 [... 99 2e-20
ref|NP_200644.1| similar to unknown protein (gb|AAB63094.1); pro... 97 1e-19
dbj|BAB93183.1| P0031D02.11 [Oryza sativa (japonica cultivar-gro... 91 7e-18
>ref|NP_180599.1| unknown protein; protein id: At2g30400.1 [Arabidopsis thaliana]
gi|25408068|pir||A84708 hypothetical protein At2g30400
[imported] - Arabidopsis thaliana
gi|1946376|gb|AAB63094.1| unknown protein [Arabidopsis
thaliana] gi|20196884|gb|AAM14819.1| unknown protein
[Arabidopsis thaliana]
Length = 320
Score = 101 bits (251), Expect = 4e-21
Identities = 49/78 (62%), Positives = 62/78 (78%)
Frame = -2
Query: 424 SSTTGSRRSFSGSCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSDQ 245
S + S++ S AV+K S +P+KDFRESM+EMI +NNIRASKDLEDLLACYL+LN +
Sbjct: 241 SRRSESKQDVLESFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKE 300
Query: 244 YHELIIKVFKQIWFDLTR 191
YH+LII VF+QIW LT+
Sbjct: 301 YHDLIIHVFEQIWLQLTK 318
>ref|NP_195804.1| putative protein; protein id: At5g01840.1 [Arabidopsis thaliana]
gi|11358135|pir||T48205 hypothetical protein T20L15.110
- Arabidopsis thaliana gi|7329657|emb|CAB82754.1|
putative protein [Arabidopsis thaliana]
Length = 270
Score = 99.0 bits (245), Expect = 2e-20
Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Frame = -2
Query: 424 SSTTGSRRSFSG---SCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLN 254
S ++ +RRS S S AVVK+S +P++DF+ESM EMI +N IRA+KDLE+LLACYL LN
Sbjct: 184 SVSSSARRSGSSARRSRAVVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLN 243
Query: 253 SDQYHELIIKVFKQIWFDL 197
SD+YH +II VFKQIW DL
Sbjct: 244 SDEYHAIIINVFKQIWLDL 262
>ref|NP_172174.1| hypothetical protein; protein id: At1g06920.1 [Arabidopsis
thaliana]
Length = 315
Score = 99.0 bits (245), Expect = 2e-20
Identities = 45/77 (58%), Positives = 57/77 (73%)
Frame = -2
Query: 427 RSSTTGSRRSFSGSCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSD 248
RS + + S AV+KSS +P KDFRESMVEMI +NNIR S D+EDLL CYL+LN
Sbjct: 231 RSKSRSQNKQILDSFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPK 290
Query: 247 QYHELIIKVFKQIWFDL 197
+YH+LIIKVF Q+W ++
Sbjct: 291 EYHDLIIKVFVQVWLEV 307
>ref|NP_200644.1| similar to unknown protein (gb|AAB63094.1); protein id: At5g58360.1
[Arabidopsis thaliana] gi|8777337|dbj|BAA96927.1|
gb|AAB63094.1~gene_id:MCK7.23~similar to unknown protein
[Arabidopsis thaliana]
Length = 296
Score = 96.7 bits (239), Expect = 1e-19
Identities = 45/79 (56%), Positives = 59/79 (73%)
Frame = -2
Query: 427 RSSTTGSRRSFSGSCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSD 248
R+S ++ S A+V SS +P+KDFRESMVEMI++N +R KDLEDLLACYLSLNS
Sbjct: 212 RTSQVSKKKGVVKSFAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSS 271
Query: 247 QYHELIIKVFKQIWFDLTR 191
+YH++IIK F+ W LT+
Sbjct: 272 EYHDVIIKAFENTWLHLTQ 290
>dbj|BAB93183.1| P0031D02.11 [Oryza sativa (japonica cultivar-group)]
Length = 472
Score = 90.5 bits (223), Expect = 7e-18
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = -2
Query: 427 RSSTTGSRRSFSGSCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSD 248
RS ++ + S AVVKSS +P++DFRESM EMI +N IR + DLEDLLACYLSLN+
Sbjct: 391 RSPAPTTKPPLAESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAA 450
Query: 247 QYHELIIKVFKQIWFDL 197
+YH+LI+ VF+ IW +L
Sbjct: 451 EYHDLIVDVFEHIWANL 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,866,874
Number of Sequences: 1393205
Number of extensions: 7300238
Number of successful extensions: 22485
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 21433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22461
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
