Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003522A_C01 KMC003522A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||I46880 T-cell receptor beta chain - rabbit (fragment) gi|55... 42 0.008
dbj|BAC55695.1| P0453E05.6 [Oryza sativa (japonica cultivar-group)] 41 0.017
sp|P06333|TCB1_RABIT T-CELL RECEPTOR BETA CHAIN ANA 11 gi|70018|... 40 0.022
sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associated ... 39 0.049
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated ... 39 0.049
>pir||I46880 T-cell receptor beta chain - rabbit (fragment)
gi|552415|gb|AAA82089.1| unknown protein
Length = 140
Score = 42.0 bits (97), Expect = 0.008
Identities = 25/67 (37%), Positives = 29/67 (42%), Gaps = 8/67 (11%)
Frame = +1
Query: 475 YSPTYWYHHWWRPSYSP-------TYCHFCFIGFLHHRTHLCFHTLRRRTHLCFHTLRRK 633
Y W H R SY T+ H C +H TH+C HT THLC HTL
Sbjct: 41 YDGFLWPSHTHRHSYQLHPHTHVCTHTHTCTHTHIHASTHVCIHTF---THLCIHTLTHA 97
Query: 634 -TILCFP 651
T+ C P
Sbjct: 98 LTLTCAP 104
>dbj|BAC55695.1| P0453E05.6 [Oryza sativa (japonica cultivar-group)]
Length = 1627
Score = 40.8 bits (94), Expect = 0.017
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = -2
Query: 630 PPEGMKAKMG----PPPEGMKAKMGPVVKKPNEAKVTVCGGVAGPPPVMVPVCGGVAGPP 463
PP ++G PPP G + P P G + GPPP P GG A PP
Sbjct: 1106 PPPPPSTRLGAPPPPPPPGAGGRAPPPPPAPG-------GRLGGPPPPPPP--GGRAPPP 1156
Query: 462 P--VMVPVSPNGNGSKLVQRRRG 400
P P P GN S L+ R RG
Sbjct: 1157 PRGPGAPPPPGGNPSSLIGRGRG 1179
>sp|P06333|TCB1_RABIT T-CELL RECEPTOR BETA CHAIN ANA 11 gi|70018|pir||RWRBB T-cell
receptor beta chain precursor (ANA 11) - rabbit
Length = 319
Score = 40.4 bits (93), Expect = 0.022
Identities = 25/67 (37%), Positives = 29/67 (42%), Gaps = 8/67 (11%)
Frame = +1
Query: 475 YSPTYWYHHWWRPSYSP-------TYCHFCFIGFLHHRTHLCFHTLRRRTHLCFHTLRRK 633
Y W H R SY T+ H C +H TH+C HT THLC HTL
Sbjct: 41 YDGFLWPSHTHRHSYLLHPHTHVCTHTHTCTHTHIHASTHVCIHT-HTFTHLCIHTLTHA 99
Query: 634 -TILCFP 651
T+ C P
Sbjct: 100 LTLTCAP 106
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
gi|5870111|gb|AAD54481.1|AF134826_1 small nuclear
ribonucleoprotein B' [Erinaceus europaeus]
Length = 240
Score = 39.3 bits (90), Expect = 0.049
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = -2
Query: 630 PPEGMKAKMGPPPEGMKAKMGPVVKKPNEAKVTVCGGVAGPPPVMVPVCGGVAGPPP 460
PP GM MGPPP GM+ MGP + P + T G PPP M P G+ GPPP
Sbjct: 184 PPPGM---MGPPP-GMRPPMGPPMGIP-PGRGTPMGM---PPPGMRPPPPGMRGPPP 232
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B'
(snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
gi|88614|pir||S09377 small nuclear ribonucleoprotein
particle (SmB') - human gi|5441444|emb|CAB46715.1|
dJ734P14.2.2 (small nuclear ribonucleoprotein
polypeptide B1 (B')) [Homo sapiens]
gi|6018504|emb|CAB57868.1| snRNP B' protein [Homo
sapiens]
Length = 240
Score = 39.3 bits (90), Expect = 0.049
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = -2
Query: 630 PPEGMKAKMGPPPEGMKAKMGPVVKKPNEAKVTVCGGVAGPPPVMVPVCGGVAGPPP 460
PP GM MGPPP GM+ MGP + P + T G PPP M P G+ GPPP
Sbjct: 184 PPPGM---MGPPP-GMRPPMGPPMGIP-PGRGTPMGM---PPPGMRPPPPGMRGPPP 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,954,848
Number of Sequences: 1393205
Number of extensions: 15925593
Number of successful extensions: 64695
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 49328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62159
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
