Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003515A_C01 KMC003515A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176020.1| hypothetical protein; protein id: At1g56240.1 [... 74 3e-12
ref|NP_197844.1| phloem-specific lectin-like protein; protein id... 71 2e-11
pir||G86223 hypothetical protein [imported] - Arabidopsis thalia... 70 3e-11
gb|AAM64609.1| phloem-specific lectin PP2-like protein [Arabidop... 70 3e-11
ref|NP_563837.1| Expressed protein; protein id: At1g09155.1, sup... 70 3e-11
>ref|NP_176020.1| hypothetical protein; protein id: At1g56240.1 [Arabidopsis
thaliana] gi|25366251|pir||A96604 hypothetical protein
F14G9.15 [imported] - Arabidopsis thaliana
gi|12321750|gb|AAG50910.1|AC069159_11 hypothetical
protein [Arabidopsis thaliana]
Length = 284
Score = 73.6 bits (179), Expect = 3e-12
Identities = 35/59 (59%), Positives = 42/59 (70%)
Frame = -2
Query: 665 EREYPKERADGWLEMELGEFFCEGGEDREVEMAVCEVKGGDWKGGLVVQGIEIRPKP*K 489
+R PK R DGWLE+ELGEF GED EV M++ EVKG KGG+V+ GIE+RP P K
Sbjct: 226 KRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRPIPLK 284
>ref|NP_197844.1| phloem-specific lectin-like protein; protein id: At5g24560.1
[Arabidopsis thaliana] gi|10177856|dbj|BAB11208.1|
phloem-specific lectin-like protein [Arabidopsis
thaliana]
Length = 251
Score = 70.9 bits (172), Expect = 2e-11
Identities = 31/51 (60%), Positives = 41/51 (79%)
Frame = -2
Query: 650 KERADGWLEMELGEFFCEGGEDREVEMAVCEVKGGDWKGGLVVQGIEIRPK 498
+ R DGWLE+ELGE++ G +D E+EM+V E + G WKGG++VQGIEIRPK
Sbjct: 199 ESREDGWLEIELGEYYV-GFDDEEIEMSVLETREGGWKGGIIVQGIEIRPK 248
>pir||G86223 hypothetical protein [imported] - Arabidopsis thaliana
gi|3249107|gb|AAC24090.1| Contains similarity to
phloem-specific lectin PP2 gb|Z17331 from Cucubita
maxima. [Arabidopsis thaliana]
Length = 288
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/67 (50%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Frame = -2
Query: 680 QVIVDEREYPKERADGWLEMELGEFFC---EGGEDREVEMAVCEVKGGDWKGGLVVQGIE 510
+V+ R P+ R DGW+E+ELGEF EG +D+EV M++ EVKG KGG+ + GIE
Sbjct: 216 EVVRSHRREPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIE 275
Query: 509 IRPKP*K 489
+RPKP K
Sbjct: 276 VRPKPLK 282
>gb|AAM64609.1| phloem-specific lectin PP2-like protein [Arabidopsis thaliana]
Length = 288
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/67 (50%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Frame = -2
Query: 680 QVIVDEREYPKERADGWLEMELGEFFC---EGGEDREVEMAVCEVKGGDWKGGLVVQGIE 510
+V+ R P+ R DGW+E+ELGEF EG +D+EV M++ EVKG KGG+ + GIE
Sbjct: 216 EVVRSHRREPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIE 275
Query: 509 IRPKP*K 489
+RPKP K
Sbjct: 276 VRPKPLK 282
>ref|NP_563837.1| Expressed protein; protein id: At1g09155.1, supported by cDNA:
31022. [Arabidopsis thaliana]
Length = 289
Score = 70.1 bits (170), Expect = 3e-11
Identities = 34/67 (50%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Frame = -2
Query: 680 QVIVDEREYPKERADGWLEMELGEFFC---EGGEDREVEMAVCEVKGGDWKGGLVVQGIE 510
+V+ R P+ R DGW+E+ELGEF EG +D+EV M++ EVKG KGG+ + GIE
Sbjct: 217 EVVRSHRREPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIE 276
Query: 509 IRPKP*K 489
+RPKP K
Sbjct: 277 VRPKPLK 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,814,312
Number of Sequences: 1393205
Number of extensions: 15374857
Number of successful extensions: 81768
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 55961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75361
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
