Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003513A_C01 KMC003513A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172697.2| hypothetical protein; protein id: At1g12330.1 [... 118 4e-26
ref|NP_196794.1| putative protein; protein id: At5g12900.1 [Arab... 94 1e-18
ref|NP_182051.1| hypothetical protein; protein id: At2g45260.1, ... 55 7e-07
gb|AAM94919.1| hypothetical protein [Oryza sativa (japonica cult... 52 4e-06
ref|NP_188105.1| hypothetical protein; protein id: At3g14870.1 [... 51 7e-06
>ref|NP_172697.2| hypothetical protein; protein id: At1g12330.1 [Arabidopsis
thaliana] gi|25372759|pir||B86258 protein F5O11.6
[imported] - Arabidopsis thaliana
gi|8778622|gb|AAF79630.1|AC025416_4 F5O11.6 [Arabidopsis
thaliana]
Length = 505
Score = 118 bits (296), Expect = 4e-26
Identities = 60/98 (61%), Positives = 68/98 (69%)
Frame = -1
Query: 529 PESLLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKLVPNM 350
PE LLQAFFGASKSVW+VHLLANSV+P L IFRV+K FD +YME+ GG+R L
Sbjct: 394 PEPLLQAFFGASKSVWLVHLLANSVNPGLQIFRVEKDDRFDPIYMEETGGERFKSL---- 449
Query: 349 VRIMVAPGFYVYGSAVKCKVLCRYLSSSNNHSHQGEVK 236
VR MV PGFYVYGS VKCKV+C+ S VK
Sbjct: 450 VRAMVQPGFYVYGSVVKCKVVCKQCGSDEEELEDHTVK 487
>ref|NP_196794.1| putative protein; protein id: At5g12900.1 [Arabidopsis thaliana]
gi|11358231|pir||T49904 hypothetical protein T24H18.70 -
Arabidopsis thaliana gi|7630046|emb|CAB88254.1| putative
protein [Arabidopsis thaliana]
gi|22655166|gb|AAM98173.1| putative protein [Arabidopsis
thaliana]
Length = 562
Score = 93.6 bits (231), Expect = 1e-18
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Frame = -1
Query: 526 ESLLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKLV---P 356
E +LQAFF A+K VW++HLLA S +P+L I RV++ F+S +MEDMG DR + P
Sbjct: 473 EQMLQAFFVAAKCVWLLHLLAFSFNPALGILRVEENREFESSFMEDMGADRQRSALSRGP 532
Query: 355 NMVRIMVAPGFYVYGSAVKCKVLCRYLS 272
V++MV PGFYV ++CKVLCRY S
Sbjct: 533 ARVKVMVMPGFYVLDRVLRCKVLCRYKS 560
>ref|NP_182051.1| hypothetical protein; protein id: At2g45260.1, supported by cDNA:
gi_20268755, supported by cDNA: gi_21281073 [Arabidopsis
thaliana] gi|25367434|pir||D84888 hypothetical protein
At2g45260 [imported] - Arabidopsis thaliana
gi|2583128|gb|AAB82637.1| hypothetical protein
[Arabidopsis thaliana] gi|20268756|gb|AAM14081.1|
unknown protein [Arabidopsis thaliana]
gi|21281074|gb|AAM45055.1| unknown protein [Arabidopsis
thaliana]
Length = 425
Score = 54.7 bits (130), Expect = 7e-07
Identities = 30/77 (38%), Positives = 44/77 (56%), Gaps = 2/77 (2%)
Frame = -1
Query: 514 QAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRA--SKLVPNMVRI 341
QAF +KS+W++H LA S P+ IF+V KG F YME + + K V +
Sbjct: 340 QAFLKLAKSIWILHRLAYSFDPAAKIFQVKKGSEFSDSYMESVVKNIVVDEKEENPRVGL 399
Query: 340 MVAPGFYVYGSAVKCKV 290
MV PGF++ GS ++ +V
Sbjct: 400 MVMPGFWIGGSVIQSRV 416
>gb|AAM94919.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|22324966|gb|AAM95693.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 470
Score = 52.0 bits (123), Expect = 4e-06
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Frame = -1
Query: 520 LLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDM-------GGDRASKL 362
L + F + S+W +H LA + P++ IF++ +G + VYME++ G K+
Sbjct: 374 LYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSVVYMENIVRSKGFSGSKELGKM 433
Query: 361 VPNMVRIMVAPGFYVYGSAVKCKVLCRYLSSSNNHSHQGE 242
+ V V PGF + G+ ++C+V YL GE
Sbjct: 434 MRPKVGFTVVPGFRLGGTVIQCRV---YLDCGKREGIIGE 470
>ref|NP_188105.1| hypothetical protein; protein id: At3g14870.1 [Arabidopsis
thaliana] gi|28393841|gb|AAO42328.1| unknown protein
[Arabidopsis thaliana] gi|28973373|gb|AAO64011.1|
unknown protein [Arabidopsis thaliana]
Length = 471
Score = 51.2 bits (121), Expect = 7e-06
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Frame = -1
Query: 523 SLLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMG--------GDRAS 368
SL AF +K VW++H LA S P IF+V +G F VYM+ + + +S
Sbjct: 374 SLCTAFLEMAKRVWLLHCLAFSFDPEASIFQVSRGCRFSEVYMKSVSEEAFFSPEQEESS 433
Query: 367 KLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLSSS 266
V V PGF + + ++C+V YLS S
Sbjct: 434 SETEPGVAFTVVPGFRIGKTTIQCEV---YLSRS 464
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,691,241
Number of Sequences: 1393205
Number of extensions: 11102381
Number of successful extensions: 26687
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 25240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26515
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
