Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003510A_C01 KMC003510A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_378016.1| 521aa long hypothetical protein [Sulfolobus tok... 37 0.14
gb|EAA17570.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.2
gb|AAD46403.1|AF096247_1 ethylene-responsive elongation factor E... 33 1.6
gb|EAA21657.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.0
gb|EAA16751.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodi... 32 4.5
>ref|NP_378016.1| 521aa long hypothetical protein [Sulfolobus tokodaii]
gi|15623136|dbj|BAB67125.1| 521aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 521
Score = 37.0 bits (84), Expect = 0.14
Identities = 24/83 (28%), Positives = 42/83 (49%)
Frame = -2
Query: 403 NFSELRFVLSIDPEVFRYNILLKILLLRRNFNGFWLVLGYAVVRSPGGCLLKAPESYS*T 224
NFSE +LS VF +NIL ++L + F L +G + S ++K+ + +
Sbjct: 194 NFSEDSIILSGVASVFLFNILSQLLNIPSTLASFLLGIGTSYASSDSEKIVKSIKPLTDF 253
Query: 223 TLVALYFVSTSSVSSESLLILNL 155
TL+ +FV+ S + + L+ L
Sbjct: 254 TLILFFFVAGSYIKVSTYLLYAL 276
>gb|EAA17570.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1458
Score = 33.9 bits (76), Expect = 1.2
Identities = 18/47 (38%), Positives = 25/47 (52%)
Frame = +3
Query: 66 KNLNTFSLLLGIFYFILNRSSTYQFICQFCKFKIKRLSELTEDVETK 206
KN+NT + + +I+ YQ I CKF +KR+ TEDV K
Sbjct: 1075 KNVNTQDITVSDIIYIIKIVKNYQ-ILNICKFLLKRIKRKTEDVIDK 1120
>gb|AAD46403.1|AF096247_1 ethylene-responsive elongation factor EF-Ts precursor [Lycopersicon
esculentum]
Length = 391
Score = 33.5 bits (75), Expect = 1.6
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query: 523 RIGSFLRMEVGEGIASQEA-DSSESVAQVA 437
+IGSFLRMEVGEG+ EA + SE +A A
Sbjct: 362 KIGSFLRMEVGEGLQRLEASNESEPLANAA 391
>gb|EAA21657.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2162
Score = 33.1 bits (74), Expect = 2.0
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 5/64 (7%)
Frame = +3
Query: 39 RIIHLFESFKNLNTFSLLLGIFYFILNRS--STYQFICQFC---KFKIKRLSELTEDVET 203
RII+ F+ F + S+ YF LN + + Y+F+C+F I ++ + T D E+
Sbjct: 1311 RIIYEFQDFSPILNESIFFNTNYFFLNNANFTNYEFLCKFLTINNLDIYKIEKKTID-ES 1369
Query: 204 KYKA 215
YKA
Sbjct: 1370 NYKA 1373
>gb|EAA16751.1| 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta 1
(ec 3.1.4.11) (plc-delta-1) (phospholipase c-delta-1)
(plc-iii) (fragment). [bovine [Plasmodium yoelii yoelii]
Length = 846
Score = 32.0 bits (71), Expect = 4.5
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 57 ESFKN--LNTFSLLLGIFYFILNRSSTYQFICQFCKFKIKRLSELTEDVETKYKATNVVQ 230
E +KN LN S L G + + TY IC + K +L + ED KY + +
Sbjct: 504 EKYKNNILNKCSCLKGYVFRNFQENRTYNEICSISENKFIKLIKKNEDDVIKYNQKTLTR 563
Query: 231 L*LSGAFSRHPPGERTTAYPSTNQKPLKF 317
+ +P G R STN PL F
Sbjct: 564 V--------YPSGTRLA---STNFNPLIF 581
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,668,794
Number of Sequences: 1393205
Number of extensions: 7358168
Number of successful extensions: 15758
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15756
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
