Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003502A_C01 KMC003502A_c01
(1063 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50647 serine/arginine-rich protein [imported] - Arabidopsi... 195 3e-82
gb|AAK93651.1| unknown protein [Arabidopsis thaliana] 194 6e-82
ref|NP_187966.1| arginine/serine-rich splicing factor SCL30a; pr... 189 2e-79
ref|NP_564685.1| arginine/serine-rich protein; protein id: At1g5... 183 1e-78
emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabid... 185 5e-78
>pir||T50647 serine/arginine-rich protein [imported] - Arabidopsis thaliana
gi|6572475|gb|AAF17288.1|AF099940_1 Serine/arginine-rich
protein [Arabidopsis thaliana]
gi|9843659|emb|CAC03603.1| SC35-like splicing factor
SCL33, 33 kD [Arabidopsis thaliana]
Length = 287
Score = 195 bits (496), Expect(2) = 3e-82
Identities = 112/175 (64%), Positives = 122/175 (69%), Gaps = 2/175 (1%)
Frame = -3
Query: 791 NPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERSRGRSYD 612
+PRGFGFVQF+DPADAADAK+HMDG +LLGRELTVVFAEENRKKPTEMR RER GR D
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134
Query: 611 RRRSPPR-YSRSPRYSRSPPPRH-RSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYT 438
RRR+PPR YSR SRSPPPR RSRSRS DYYSPPP+R RS+SP E RY
Sbjct: 135 RRRTPPRYYSR----SRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY------- 183
Query: 437 PRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSPSPIHGDVRESARIRSPSHVR 273
RSYSRSP + GSR RS +P + S SPSP R R RSPS R
Sbjct: 184 --DGRRSYSRSPA-SDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKR 235
Score = 133 bits (335), Expect(2) = 3e-82
Identities = 69/92 (75%), Positives = 72/92 (78%)
Frame = -2
Query: 1047 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYGPRPRDLPTSLLVRNLRHDCRP 868
MRGRSYTPSPP RGYGRRG RSPSPRG RYG R RDLPTSLLVRNLRHDCR
Sbjct: 1 MRGRSYTPSPP----RGYGRRG-----RSPSPRG--RYGGRSRDLPTSLLVRNLRHDCRQ 49
Query: 867 EDLRRPFGQFGPLKDIYLPKDYYTGQPPRFRF 772
EDLR+ F QFGP+KDIYLP+DYYTG P F F
Sbjct: 50 EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGF 81
>gb|AAK93651.1| unknown protein [Arabidopsis thaliana]
Length = 263
Score = 194 bits (493), Expect(2) = 6e-82
Identities = 111/175 (63%), Positives = 121/175 (68%), Gaps = 2/175 (1%)
Frame = -3
Query: 791 NPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERSRGRSYD 612
+PRGFGFVQF+DPADAADAK+HMDG +LLGRELTVVFAEENRKKPTEMR RER GR D
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134
Query: 611 RRRSPPR-YSRSPRYSRSPPPRH-RSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYT 438
RRR+PPR YSR SRSPPPR RSRSRS DYYSPPP+R RS+SP E RY
Sbjct: 135 RRRTPPRYYSR----SRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY------- 183
Query: 437 PRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSPSPIHGDVRESARIRSPSHVR 273
RSYSRSP + GSR RS +P + S SPSP R R RSP R
Sbjct: 184 --DGRRSYSRSPA-SDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPRRSR 235
Score = 133 bits (335), Expect(2) = 6e-82
Identities = 69/92 (75%), Positives = 72/92 (78%)
Frame = -2
Query: 1047 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYGPRPRDLPTSLLVRNLRHDCRP 868
MRGRSYTPSPP RGYGRRG RSPSPRG RYG R RDLPTSLLVRNLRHDCR
Sbjct: 1 MRGRSYTPSPP----RGYGRRG-----RSPSPRG--RYGGRSRDLPTSLLVRNLRHDCRQ 49
Query: 867 EDLRRPFGQFGPLKDIYLPKDYYTGQPPRFRF 772
EDLR+ F QFGP+KDIYLP+DYYTG P F F
Sbjct: 50 EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGF 81
>ref|NP_187966.1| arginine/serine-rich splicing factor SCL30a; protein id:
At3g13570.1, supported by cDNA: gi_13878010, supported
by cDNA: gi_17104622 [Arabidopsis thaliana]
gi|11994559|dbj|BAB02599.1| contains similarity to
Serine/arginine-rich protein~gene_id:K20M4.1
[Arabidopsis thaliana]
gi|13878011|gb|AAK44083.1|AF370268_1 putative
serine/arginine-rich protein [Arabidopsis thaliana]
gi|17104623|gb|AAL34200.1| putative serine/arginine-rich
protein [Arabidopsis thaliana]
Length = 262
Score = 189 bits (481), Expect(2) = 2e-79
Identities = 105/157 (66%), Positives = 117/157 (73%), Gaps = 4/157 (2%)
Frame = -3
Query: 791 NPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERS--RGRS 618
+PRGFGF+QF+DPADAA+AK+ MDG +LLGRELTVVFAEENRKKPTEMR R+R R
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRF 135
Query: 617 YDRRRSPPRYSRSPRYSRSPPPR--HRSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERS 444
DRRRSP PRYSRSPPPR RSRSRSR Y SPP KR SRSVSP++RRY
Sbjct: 136 QDRRRSP------PRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRY----- 184
Query: 443 YTPRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSP 333
+ERSYSRSPP+N GSR RS SP +V HSRSP
Sbjct: 185 ----EKERSYSRSPPHN-GSRVRSGSPGRVKSHSRSP 216
Score = 129 bits (325), Expect(2) = 2e-79
Identities = 69/93 (74%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Frame = -2
Query: 1047 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYG-PRPRDLPTSLLVRNLRHDCR 871
MRGRSYTPSPP RGYGRRG RSPSPRG R+G R DLPTSLLVRNLRHDCR
Sbjct: 1 MRGRSYTPSPP----RGYGRRG-----RSPSPRG--RFGGSRDSDLPTSLLVRNLRHDCR 49
Query: 870 PEDLRRPFGQFGPLKDIYLPKDYYTGQPPRFRF 772
EDLRRPF QFGP+KDIYLP+DYYTG P F F
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGF 82
>ref|NP_564685.1| arginine/serine-rich protein; protein id: At1g55310.1, supported by
cDNA: gi_6572474 [Arabidopsis thaliana]
gi|25405814|pir||B96595 unknown protein, 47745-45927
[imported] - Arabidopsis thaliana
gi|12323160|gb|AAG51556.1|AC027034_2 unknown protein;
47745-45927 [Arabidopsis thaliana]
Length = 220
Score = 183 bits (464), Expect(2) = 1e-78
Identities = 102/156 (65%), Positives = 114/156 (72%), Gaps = 2/156 (1%)
Frame = -3
Query: 791 NPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERSRGRSYD 612
+PRGFGFVQF+DPADAADAK+HMDG +LLGRELTVVFAEENRKKPTEMR RER GR D
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134
Query: 611 RRRSPPR-YSRSPRYSRSPPPRH-RSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYT 438
RRR+PPR YSR SRSPPPR RSRSRS DYYSPPP+R RS+SP E RY
Sbjct: 135 RRRTPPRYYSR----SRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY------- 183
Query: 437 PRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSPS 330
RSYSRSP + GSR RS +P + S +P+
Sbjct: 184 --DGRRSYSRSPA-SDGSRGRSLTPVRGKSRSLTPA 216
Score = 133 bits (335), Expect(2) = 1e-78
Identities = 69/92 (75%), Positives = 72/92 (78%)
Frame = -2
Query: 1047 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYGPRPRDLPTSLLVRNLRHDCRP 868
MRGRSYTPSPP RGYGRRG RSPSPRG RYG R RDLPTSLLVRNLRHDCR
Sbjct: 1 MRGRSYTPSPP----RGYGRRG-----RSPSPRG--RYGGRSRDLPTSLLVRNLRHDCRQ 49
Query: 867 EDLRRPFGQFGPLKDIYLPKDYYTGQPPRFRF 772
EDLR+ F QFGP+KDIYLP+DYYTG P F F
Sbjct: 50 EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGF 81
>emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana]
Length = 261
Score = 185 bits (469), Expect(2) = 5e-78
Identities = 102/155 (65%), Positives = 114/155 (72%), Gaps = 2/155 (1%)
Frame = -3
Query: 791 NPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERS--RGRS 618
+PRGFGF+QF+DPADAA+AK+ MDG +LLGRELTVVFAEENRKKPTEMR R+R R
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRF 135
Query: 617 YDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYT 438
DRRRSPPRYSRSP P RSRSRS Y SPP KR SRSVSP++RRY
Sbjct: 136 QDRRRSPPRYSRSP-----PRRGRRSRSRSCGYNSPPAKRHQSRSVSPQDRRY------- 183
Query: 437 PRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSP 333
+ERSYSRSPP+N GSR RS SP +V HSRSP
Sbjct: 184 --EKERSYSRSPPHN-GSRVRSGSPGRVKSHSRSP 215
Score = 129 bits (325), Expect(2) = 5e-78
Identities = 69/93 (74%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Frame = -2
Query: 1047 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYG-PRPRDLPTSLLVRNLRHDCR 871
MRGRSYTPSPP RGYGRRG RSPSPRG R+G R DLPTSLLVRNLRHDCR
Sbjct: 1 MRGRSYTPSPP----RGYGRRG-----RSPSPRG--RFGGSRDSDLPTSLLVRNLRHDCR 49
Query: 870 PEDLRRPFGQFGPLKDIYLPKDYYTGQPPRFRF 772
EDLRRPF QFGP+KDIYLP+DYYTG P F F
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGF 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 974,300,918
Number of Sequences: 1393205
Number of extensions: 25753312
Number of successful extensions: 271573
Number of sequences better than 10.0: 3050
Number of HSP's better than 10.0 without gapping: 107693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218425
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 63188388383
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
