Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003487A_C01 KMC003487A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42831.1| At1g75540 [Arabidopsis thaliana] 49 6e-05
ref|NP_177686.1| CONSTANS B-box zinc finger family protein; prot... 46 3e-04
gb|EAA20583.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.1
ref|NP_655656.1| Sigma70_ECF, Sigma-70 factor (ECF subfamily) [B... 33 2.4
ref|XP_148915.1| hypothetical protein XP_148915 [Mus musculus] 33 2.4
>gb|AAO42831.1| At1g75540 [Arabidopsis thaliana]
Length = 148
Score = 48.5 bits (114), Expect = 6e-05
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Frame = -2
Query: 562 GWQVEDLLDSYVVPFGFSKGDHD----ILQQFDDAGIEGNLCSFSPNNN----------G 425
GW VED LDS + +GFSK D D ++ DD + N + + NNN G
Sbjct: 6 GWHVEDFLDSSLPTYGFSKSDDDGVLPYMEPEDDNNTKRNNNNNNNNNNNTVSLPSKNLG 65
Query: 424 IWVRS------STTSSVFFSDGSCVWAKL*QKKVALPHI-----------KGSSRSRLRD 296
IWV S+ + +FS + + + K+ + P + +G + R D
Sbjct: 66 IWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETS-PEVVSFAPIQNMKQQGQNNKRWYD 124
Query: 295 D-VFTVPQISPD--STSKRTRYLW 233
D FTVPQI+P S++K+ R W
Sbjct: 125 DGGFTVPQITPPPLSSNKKFRSFW 148
>ref|NP_177686.1| CONSTANS B-box zinc finger family protein; protein id: At1g75540.1
[Arabidopsis thaliana] gi|17433066|sp|Q9LQZ7|COL6_ARATH
Zinc finger protein constans-like 6
gi|25404982|pir||G96785 protein F10A5.24 [imported] -
Arabidopsis thaliana
gi|9369377|gb|AAF87126.1|AC006434_22 F10A5.24
[Arabidopsis thaliana]
Length = 331
Score = 46.2 bits (108), Expect = 3e-04
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 35/145 (24%)
Frame = -2
Query: 562 GWQVEDLLDSYVVPFGFSK-GDHD----ILQQFDDAGIEGNLCSFSPNNN---------- 428
GW VED LDS + +GFSK GD D ++ DD + N + + NNN
Sbjct: 188 GWHVEDFLDSSLPTYGFSKSGDDDGVLPYMEPEDDNNTKRNNNNNNNNNNNTVSLPSKNL 247
Query: 427 GIWVRS------STTSSVFFSDGSCVWAKL*QKKVALPHI-----------KGSSRSRLR 299
GIWV S+ + +FS + + + K+ + P + +G + R
Sbjct: 248 GIWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETS-PEVVSFAPIQNMKQQGQNNKRWY 306
Query: 298 DD-VFTVPQISPD--STSKRTRYLW 233
DD FTVPQI+P S++K+ R W
Sbjct: 307 DDGGFTVPQITPPPLSSNKKFRSFW 331
>gb|EAA20583.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 861
Score = 34.3 bits (77), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (57%)
Frame = +3
Query: 36 HREKDAHTYIYIKKAELSSEDSGNWKREKQSNKTK*ERENGSKNIQTN 179
H +K+ YI+ K +L ++DS N ++ Q N K ++N KN+Q N
Sbjct: 102 HFQKNMENYIHRKSNKLFNQDSKNLQKNLQKNLQKNLQKNLQKNLQKN 149
>ref|NP_655656.1| Sigma70_ECF, Sigma-70 factor (ECF subfamily) [Bacillus anthracis
A2012]
Length = 160
Score = 33.1 bits (74), Expect = 2.4
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 62 YIYQKSRVEFRRQWKLEKRKTVKQNQMREREWIKKHTNKQQ 184
Y+ +KS E Q K+E KTV+ R R+WIKKH +++
Sbjct: 119 YLEEKSYQEIALQEKIEV-KTVEMKLYRARKWIKKHWKEEE 158
>ref|XP_148915.1| hypothetical protein XP_148915 [Mus musculus]
Length = 178
Score = 33.1 bits (74), Expect = 2.4
Identities = 17/56 (30%), Positives = 32/56 (56%), Gaps = 7/56 (12%)
Frame = -3
Query: 189 HPC---CLFVCFLIHSLSLIWFCLTVFLF-SNFHCLLNSTLLF*YI---YMYVHLS 43
HPC C++VC + ++ C+ +F++ S + C+ S L+ YI Y+ ++LS
Sbjct: 41 HPCMYVCMYVCMYVCMHVYLYLCMYLFMYLSIYACMFVSIYLYVYIVSVYLSIYLS 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,631,331
Number of Sequences: 1393205
Number of extensions: 11529468
Number of successful extensions: 35381
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 33448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35301
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
