Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003486A_C01 KMC003486A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86192 hypothetical protein [imported] - Arabidopsis thalia... 143 2e-33
ref|NP_172073.1| unknown protein; protein id: At1g05820.1 [Arabi... 143 2e-33
gb|AAL14628.1|AF417575_1 growth-on protein GRO11 [Euphorbia esula] 115 4e-25
ref|NP_171671.1| unknown protein; protein id: At1g01650.1 [Arabi... 107 1e-22
pir||D86147 T1N6.3 protein - Arabidopsis thaliana gi|8671842|gb|... 107 1e-22
>pir||H86192 hypothetical protein [imported] - Arabidopsis thaliana
gi|6850311|gb|AAF29388.1|AC009999_8 Contains similarity
to a vacuolar sorting receptor homolog from Arabidopsis
thaliana gb|U79959
Length = 536
Score = 143 bits (360), Expect = 2e-33
Identities = 64/96 (66%), Positives = 76/96 (78%)
Frame = -1
Query: 651 GFGDIIFPGLLTSFAHRFDKDNKKGALNGYFLWTVLGYGVGLVLTYLALYLMDGNGQPAL 472
GFGDI+FPGLL F RFDK+N KG NGYF W + GYG+GL LTYL LY+M+G+GQPAL
Sbjct: 434 GFGDILFPGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPAL 493
Query: 471 LYLVPCTLGVVVILGWIRGELKSLWNYGTDSSVSAE 364
LYLVPCTLG+ VILG +R EL+ LWNYGT +A+
Sbjct: 494 LYLVPCTLGITVILGLVRKELRDLWNYGTQQPSAAD 529
>ref|NP_172073.1| unknown protein; protein id: At1g05820.1 [Arabidopsis thaliana]
Length = 441
Score = 143 bits (360), Expect = 2e-33
Identities = 64/96 (66%), Positives = 76/96 (78%)
Frame = -1
Query: 651 GFGDIIFPGLLTSFAHRFDKDNKKGALNGYFLWTVLGYGVGLVLTYLALYLMDGNGQPAL 472
GFGDI+FPGLL F RFDK+N KG NGYF W + GYG+GL LTYL LY+M+G+GQPAL
Sbjct: 339 GFGDILFPGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPAL 398
Query: 471 LYLVPCTLGVVVILGWIRGELKSLWNYGTDSSVSAE 364
LYLVPCTLG+ VILG +R EL+ LWNYGT +A+
Sbjct: 399 LYLVPCTLGITVILGLVRKELRDLWNYGTQQPSAAD 434
>gb|AAL14628.1|AF417575_1 growth-on protein GRO11 [Euphorbia esula]
Length = 538
Score = 115 bits (289), Expect = 4e-25
Identities = 56/92 (60%), Positives = 67/92 (71%)
Frame = -1
Query: 651 GFGDIIFPGLLTSFAHRFDKDNKKGALNGYFLWTVLGYGVGLVLTYLALYLMDGNGQPAL 472
GFGDII PGLL +FA R+D KK GYFLW + YG+GL++TY+AL LMDG+GQPAL
Sbjct: 434 GFGDIILPGLLVTFALRYDWLTKKNLRAGYFLWAMTAYGLGLLVTYVALNLMDGHGQPAL 493
Query: 471 LYLVPCTLGVVVILGWIRGELKSLWNYGTDSS 376
LY+VP TLG + LG RGELK+LW G S
Sbjct: 494 LYIVPFTLGTFLTLGKTRGELKALWTRGEPDS 525
>ref|NP_171671.1| unknown protein; protein id: At1g01650.1 [Arabidopsis thaliana]
Length = 491
Score = 107 bits (268), Expect = 1e-22
Identities = 52/88 (59%), Positives = 66/88 (74%)
Frame = -1
Query: 651 GFGDIIFPGLLTSFAHRFDKDNKKGALNGYFLWTVLGYGVGLVLTYLALYLMDGNGQPAL 472
GFGDII PGLL +FA R+D K +GYFL T+ YG+GL++TY+AL LMDG+GQPAL
Sbjct: 388 GFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPAL 447
Query: 471 LYLVPCTLGVVVILGWIRGELKSLWNYG 388
LY+VP LG + +LG RG+LK+LW G
Sbjct: 448 LYIVPFILGTLFVLGHKRGDLKTLWTTG 475
>pir||D86147 T1N6.3 protein - Arabidopsis thaliana
gi|8671842|gb|AAF78405.1|AC009273_11 ESTs gb|AA586244
and gb|T21200 come from this gene. [Arabidopsis
thaliana]
Length = 613
Score = 107 bits (268), Expect = 1e-22
Identities = 52/88 (59%), Positives = 66/88 (74%)
Frame = -1
Query: 651 GFGDIIFPGLLTSFAHRFDKDNKKGALNGYFLWTVLGYGVGLVLTYLALYLMDGNGQPAL 472
GFGDII PGLL +FA R+D K +GYFL T+ YG+GL++TY+AL LMDG+GQPAL
Sbjct: 510 GFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPAL 569
Query: 471 LYLVPCTLGVVVILGWIRGELKSLWNYG 388
LY+VP LG + +LG RG+LK+LW G
Sbjct: 570 LYIVPFILGTLFVLGHKRGDLKTLWTTG 597
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,085,602
Number of Sequences: 1393205
Number of extensions: 11232290
Number of successful extensions: 23963
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 23096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23862
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
