Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003485A_C01 KMC003485A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567797.1| expressed protein; protein id: At4g28100.1, sup... 63 2e-09
gb|AAM65702.1| unknown [Arabidopsis thaliana] 63 2e-09
ref|NP_566596.1| expressed protein; protein id: At3g18050.1, sup... 35 0.37
emb|CAD55494.1| hypothetical protein [Streptomyces coelicolor A3... 33 1.1
gb|EAA17110.1| hypothetical protein [Plasmodium yoelii yoelii] 33 1.4
>ref|NP_567797.1| expressed protein; protein id: At4g28100.1, supported by cDNA:
42155. [Arabidopsis thaliana] gi|7486959|pir||T02911
hypothetical protein T13J8.210 - Arabidopsis thaliana
gi|4455369|emb|CAB36779.1| hypothetical protein
[Arabidopsis thaliana] gi|7269664|emb|CAB79612.1|
hypothetical protein [Arabidopsis thaliana]
Length = 304
Score = 62.8 bits (151), Expect = 2e-09
Identities = 32/47 (68%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = -3
Query: 456 VLRAMMYSAHP-HESKCSPDQENMPLAVDSLQFESGIATSWPSHFLG 319
VLRA+MYS HP H +KCSPDQENMPLAVDSLQF+ ++S SH G
Sbjct: 244 VLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKSFSSS--SHLFG 288
>gb|AAM65702.1| unknown [Arabidopsis thaliana]
Length = 304
Score = 62.8 bits (151), Expect = 2e-09
Identities = 32/47 (68%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = -3
Query: 456 VLRAMMYSAHP-HESKCSPDQENMPLAVDSLQFESGIATSWPSHFLG 319
VLRA+MYS HP H +KCSPDQENMPLAVDSLQF+ ++S SH G
Sbjct: 244 VLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKSFSSS--SHLFG 288
>ref|NP_566596.1| expressed protein; protein id: At3g18050.1, supported by cDNA:
gi_15451205 [Arabidopsis thaliana]
gi|9294060|dbj|BAB02017.1|
emb|CAB36779.1~gene_id:MRC8.3~similar to unknown protein
[Arabidopsis thaliana] gi|15451206|gb|AAK96874.1|
Unknown protein [Arabidopsis thaliana]
gi|23197698|gb|AAN15376.1| Unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 35.0 bits (79), Expect = 0.37
Identities = 19/49 (38%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = -3
Query: 456 VLRAMMYSAHPHESKCSPDQENMPLAVDSLQFESGIATS--WPSHFLGY 316
VLRA+M + C+ + MPLAVDS +F +G TS +P H + +
Sbjct: 273 VLRAVMLNHDGVPRSCALGSDGMPLAVDSSEFSNGSPTSLQYPHHLVHF 321
>emb|CAD55494.1| hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 458
Score = 33.5 bits (75), Expect = 1.1
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
Frame = +1
Query: 187 VTETSKKKDTEKKKIQRESGKLPIQLNRTLFQTR---DSRMMKGKSVTQKVGRPRCRNAT 357
V T +D + + R +G ++ + F R D+ + +G V Q+ GRP R T
Sbjct: 277 VPATGFPRDGQTVTVLRITGSQEVREDPIPFDERRAEDASLFRGTEVVQEAGRPGLRRTT 336
Query: 358 LELKRING*R 387
L+ +NG R
Sbjct: 337 YALRTVNGVR 346
>gb|EAA17110.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 705
Score = 33.1 bits (74), Expect = 1.4
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Frame = +3
Query: 162 ILSGSLTSRDRNVQEKGH*E-EKDTEREWEA---------TNSTEPDPFSNKR*QNDEGQ 311
I + + DRN +++ E E+ EREWE TN +P+P K + Q
Sbjct: 379 IYENLVLNTDRNKEKEREREIERKQEREWEKEREKDRNPNTNKNKPNPLEEKLLLIIKEQ 438
Query: 312 KRNPKSGTATMSQC-----HSRTEENQRLAACSL 398
K +PKS + +Q SRT ++ +C++
Sbjct: 439 KGDPKSENSEQNQGITVLEFSRTPSKKKKRSCTI 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,112,865
Number of Sequences: 1393205
Number of extensions: 7524300
Number of successful extensions: 19858
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19817
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
