Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003468A_C01 KMC003468A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P52423|PUR3_VIGUN Phosphoribosylglycinamide formyltransferase... 193 1e-48
pir||T11574 phosphoribosylglycinamide formyltransferase (EC 2.1.... 189 3e-47
sp|Q42805|PUR3_SOYBN Phosphoribosylglycinamide formyltransferase... 171 5e-42
ref|NP_174407.1| putative phosphoribosylglycinamide formyltransf... 159 3e-38
pir||S37105 phosphoribosylglycinamide formyltransferase (EC 2.1.... 126 2e-28
>sp|P52423|PUR3_VIGUN Phosphoribosylglycinamide formyltransferase, chloroplast precursor
(GART) (GAR transformylase)
(5'-phosphoribosylglycinamide transformylase)
gi|25990313|gb|AAD45353.2|AF160196_1 glycinamide
ribonucleotide transformylase [Vigna unguiculata]
gi|27777702|gb|AAA75367.2| glycinamide ribonucleotide
transformylase [Vigna unguiculata]
gi|27922943|gb|AAO25114.1| glycinamide ribonucleotide
transformylase [Vigna unguiculata]
gi|27922945|gb|AAO25115.1| glycinamide ribonucleotide
transformylase [Vigna unguiculata]
Length = 312
Score = 193 bits (491), Expect = 1e-48
Identities = 93/106 (87%), Positives = 99/106 (92%)
Frame = -1
Query: 603 HPSLFPASGGKGFYGMNVHKAVIASGARFSGATIHFVDEHYDTGRILAQRVVPVLANDTA 424
HPSL PA GGKG+YGM VHKAVIASGARFSG TIHFVDEHYDTGRILAQRVVPVLANDTA
Sbjct: 206 HPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTA 265
Query: 423 EELAARVIREEHQLYVEAVEALCEDRVVLRKDGVPLIQNKENPNEF 286
EELAARV+ EEHQLYVE VEALCE+R+V RKDGVPLIQ++ENPNEF
Sbjct: 266 EELAARVLNEEHQLYVEVVEALCEERIVWRKDGVPLIQSRENPNEF 311
>pir||T11574 phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) - cowpea
Length = 312
Score = 189 bits (479), Expect = 3e-47
Identities = 91/105 (86%), Positives = 97/105 (91%)
Frame = -1
Query: 603 HPSLFPASGGKGFYGMNVHKAVIASGARFSGATIHFVDEHYDTGRILAQRVVPVLANDTA 424
HPSL PA GGKG+YGM VHKAVIASGARFSG TIHFVDEHYDTGRILAQRVVPVLANDTA
Sbjct: 206 HPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTA 265
Query: 423 EELAARVIREEHQLYVEAVEALCEDRVVLRKDGVPLIQNKENPNE 289
EELAARV+ EEHQLYVE VEALCE+R+V RKDGVPLIQ++ENP E
Sbjct: 266 EELAARVLNEEHQLYVEVVEALCEERIVWRKDGVPLIQSRENPTE 310
>sp|Q42805|PUR3_SOYBN Phosphoribosylglycinamide formyltransferase, chloroplast precursor
(GART) (GAR transformylase)
(5'-phosphoribosylglycinamide transformylase) (GMpurN)
gi|7433557|pir||T07781 probable
phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
- soybean gi|1321822|emb|CAA65608.1|
phosphoribosylglycinamide formyltransferase [Glycine
max]
Length = 295
Score = 171 bits (432), Expect(2) = 5e-42
Identities = 83/97 (85%), Positives = 90/97 (92%)
Frame = -1
Query: 573 KGFYGMNVHKAVIASGARFSGATIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVIRE 394
+G +GM VHKAVIASGARFSG TIHFVDEHYDTGRILAQRVVPV ANDT EELAARV++E
Sbjct: 199 QGIHGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVQANDTVEELAARVLKE 258
Query: 393 EHQLYVEAVEALCEDRVVLRKDGVPLIQNKENPNEFR 283
EHQLYVE VEALCE+RVV R+DGVPLIQ+KENPNEFR
Sbjct: 259 EHQLYVEVVEALCEERVVWRQDGVPLIQSKENPNEFR 295
Score = 22.3 bits (46), Expect(2) = 5e-42
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 598 ISFSSFWRQGL 566
I+ SSFWRQG+
Sbjct: 191 ITSSSFWRQGI 201
>ref|NP_174407.1| putative phosphoribosylglycinamide formyltransferase; protein id:
At1g31220.1 [Arabidopsis thaliana]
gi|14917033|sp|P52422|PUR3_ARATH
Phosphoribosylglycinamide formyltransferase, chloroplast
precursor (GART) (GAR transformylase)
(5'-phosphoribosylglycinamide transformylase)
gi|25286216|pir||D86438 phosphoribosylglycinamide
formyltransferase - Arabidopsis thaliana
gi|4512619|gb|AAD21688.1| This gene is a member of the
formyl transferase family PF|00551 and may be a
pseudogene of gb|X74767 phosphoribosylglycinamide formyl
transferase (PUR3) from Arabidopsis thaliana since our
sequence differs from PUR3 by an insertion of an A at bp
225 and a deletion of an A at bp 1276
gi|4753662|emb|CAA52779.2| phosphoribosylglycinamide
formyltransferase [Arabidopsis thaliana]
gi|28392982|gb|AAO41926.1| putative
phosphoribosylglycinamide formyltransferase [Arabidopsis
thaliana]
Length = 292
Score = 159 bits (401), Expect = 3e-38
Identities = 74/106 (69%), Positives = 89/106 (83%)
Frame = -1
Query: 603 HPSLFPASGGKGFYGMNVHKAVIASGARFSGATIHFVDEHYDTGRILAQRVVPVLANDTA 424
HP+L PA GGKG YG+ VHKAV+ SGAR+SG TIHFV+E YDTGRILAQ V V+ANDT
Sbjct: 186 HPALLPAFGGKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTP 245
Query: 423 EELAARVIREEHQLYVEAVEALCEDRVVLRKDGVPLIQNKENPNEF 286
EELA RV+ EEH+LYVE V A+CE+R+ R+DGVPLIQNK+NP+E+
Sbjct: 246 EELAKRVLHEEHKLYVEVVGAICEERIKWREDGVPLIQNKQNPDEY 291
>pir||S37105 phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) -
Arabidopsis thaliana
Length = 226
Score = 126 bits (317), Expect = 2e-28
Identities = 59/85 (69%), Positives = 70/85 (81%)
Frame = -1
Query: 603 HPSLFPASGGKGFYGMNVHKAVIASGARFSGATIHFVDEHYDTGRILAQRVVPVLANDTA 424
HP+L PA GGKG YG+ VHKAV+ SGAR+SG TIHFV+E YDTGRILAQ V V+ANDT
Sbjct: 140 HPALLPAFGGKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTP 199
Query: 423 EELAARVIREEHQLYVEAVEALCED 349
EELA RV+ E+H+LYVE V A+CE+
Sbjct: 200 EELAKRVLHEDHKLYVEVVGAICEE 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,058,052
Number of Sequences: 1393205
Number of extensions: 10900145
Number of successful extensions: 25797
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 24893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25753
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
