Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003456A_C01 KMC003456A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00000549.1| hypothetical protein [Ferroplasma acidarmanus] 35 0.74
ref|NP_704836.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.7
ref|NP_044795.1| Orf717 [Reclinomonas americana] gi|7515441|pir|... 32 6.3
>gb|ZP_00000549.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 285
Score = 35.4 bits (80), Expect = 0.74
Identities = 19/36 (52%), Positives = 24/36 (65%)
Frame = +1
Query: 517 VNDAYVDFKNK*KIINKLHIRYFNLIKKYNKIKLIE 624
VN+ Y+DFKNK INK I Y +++ YNKIK E
Sbjct: 211 VNNVYLDFKNKSDPINK--ISYKQMLEYYNKIKFEE 244
>ref|NP_704836.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505198|emb|CAD51979.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 558
Score = 34.3 bits (77), Expect = 1.7
Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
Frame = +1
Query: 553 KIINKLHIRYFNLIKKYN------KIKLIEIPKDFFSFHNHLHLL 669
+II K+H+ + N I KYN + + E KDF FHN+L+LL
Sbjct: 125 RIIEKMHLVFHNSIFKYNDNIEWDSLHIKEKYKDFNFFHNNLNLL 169
>ref|NP_044795.1| Orf717 [Reclinomonas americana] gi|7515441|pir||S78177 hypothetical
protein 717 - Reclinomonas americana (ATCC 50394)
mitochondrion gi|2258376|gb|AAD11910.1| Orf717
[Reclinomonas americana]
Length = 717
Score = 32.3 bits (72), Expect = 6.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 508 ADCVNDAYVDFKNK*KIINKLHIRYFNLIKKYNKIKLI-----EIPKDFFSFHNH 657
+D ND Y KN KIINK +I Y N++ ++ I ++P +FF + H
Sbjct: 508 SDNTNDFYQLLKNTQKIINKEYIYYLNIVFLTQYVQRIARDIQKMPHEFFIYFLH 562
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,119,088
Number of Sequences: 1393205
Number of extensions: 9842647
Number of successful extensions: 25614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25597
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
