Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003440A_C01 KMC003440A_c01
(368 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana] 39 0.016
ref|NP_565288.1| putative receptor-like protein kinase; protein ... 39 0.016
emb|CAB61519.1| capsid protein [Human rotavirus G9] 34 0.53
dbj|BAA82387.1| Similar to SEC7 protein, Saccharomyces cerevisia... 32 1.5
dbj|BAA23296.1| VP7 [Human rotavirus G3] 32 1.5
>dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana]
Length = 397
Score = 38.9 bits (89), Expect = 0.016
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 367 FVGVQIEAEYKNEDSPCRTPDRRARLAVVGVVKVAVRSSSM 245
FVGVQ+EA +N + P+ R +L+VVG V+VAVRSS M
Sbjct: 355 FVGVQVEASCRNTEIKELRPETR-QLSVVGAVRVAVRSSLM 394
>ref|NP_565288.1| putative receptor-like protein kinase; protein id: At2g02710.1,
supported by cDNA: gi_15010681, supported by cDNA:
gi_16323301 [Arabidopsis thaliana]
gi|15010682|gb|AAK74000.1| At2g02710/T20F6.15
[Arabidopsis thaliana] gi|16323302|gb|AAL15406.1|
At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|20196957|gb|AAC05351.2| putative receptor-like
protein kinase [Arabidopsis thaliana]
Length = 399
Score = 38.9 bits (89), Expect = 0.016
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 367 FVGVQIEAEYKNEDSPCRTPDRRARLAVVGVVKVAVRSSSM 245
FVGVQ+EA +N + P+ R +L+VVG V+VAVRSS M
Sbjct: 357 FVGVQVEASCRNTEIKELRPETR-QLSVVGAVRVAVRSSLM 396
>emb|CAB61519.1| capsid protein [Human rotavirus G9]
Length = 326
Score = 33.9 bits (76), Expect = 0.53
Identities = 19/62 (30%), Positives = 31/62 (49%)
Frame = +1
Query: 142 FPNV*TFF*KIIFRNYILKAMNPPGSYPIWTFLQSLMNSSPQP*PHQPRLSVPSYQGFDT 321
+ + TF I+ NYILK++ + I+ FL +++SSP ++VP DT
Sbjct: 6 YTTILTFLISIVLLNYILKSLTSAMDFIIYRFLLLIVDSSPFVKTQNYGINVPITGSMDT 65
Query: 322 GY 327
Y
Sbjct: 66 EY 67
>dbj|BAA82387.1| Similar to SEC7 protein, Saccharomyces cerevisiae, PIR2:S49764;
Contains Immunoglobulins and major histocompatibility
complex proteins signature. (AL022604) [Oryza sativa
(japonica cultivar-group)]
Length = 1687
Score = 32.3 bits (72), Expect = 1.5
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Frame = -2
Query: 352 IEAEYKNEDSPCRTPDRRARLAVVGVVKVAVRSSSMTAGTSK*DNSPVDSSPSIYSF--- 182
+E+E K + S T +R V AVR S + T+K + SP+ + I SF
Sbjct: 926 VESEDKTQKSSSTTASKRTNALQNPAVMAAVRGGSYDSTTAKNNASPLVTPEQINSFISN 985
Query: 181 -------*ILSSKKMFTHSENYPSQLVIVEMIEM*KIDVKKMNNGQLP 59
I +F HS+ S ++ + + K+ + ++++ P
Sbjct: 986 INLLDQIGIFELNHIFAHSQRLNSDAIVAFVKALCKVSMTELHSPTEP 1033
>dbj|BAA23296.1| VP7 [Human rotavirus G3]
Length = 326
Score = 32.3 bits (72), Expect = 1.5
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 142 FPNV*TFF*KIIFRNYILKAMNPPGSYPIWTFLQSLMNSSPQP*PHQPRLSVPSYQGFDT 321
+ V TF II NY+LK++ Y I+ FL ++ SP P +++P DT
Sbjct: 6 YTTVLTFLISIILLNYVLKSVTRIMDYIIYRFLLIIVILSPLPNAQNYGINLPITGSMDT 65
Query: 322 GY 327
Y
Sbjct: 66 LY 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,179,766
Number of Sequences: 1393205
Number of extensions: 6047635
Number of successful extensions: 13367
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 13216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13364
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
