Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003438A_C01 KMC003438A_c01
(735 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD29735.1| allene oxide synthase [Solanum tuberosum] 231 1e-59
emb|CAB88032.1| allene oxide synthase [Lycopersicon esculentum] 228 5e-59
emb|CAC82911.1| allene oxide synthase [Nicotiana attenuata] 226 3e-58
gb|AAO72741.1| allene oxide synthase [Citrus sinensis] 223 2e-57
emb|CAA63266.1| allene oxide synthase [Arabidopsis thaliana] 222 4e-57
>emb|CAD29735.1| allene oxide synthase [Solanum tuberosum]
Length = 530
Score = 231 bits (588), Expect = 1e-59
Identities = 107/144 (74%), Positives = 129/144 (89%)
Frame = -3
Query: 733 KSVVYEAFRVDPPVPLXFGRVRKDMVIESHDHAFRVKKGEMLFGYQPFATKDPKIFERAE 554
KSVVYE+ R++PPV +GR + DMVIESHD +F +K+GE+L+G+QPFATKDPKIF+R+E
Sbjct: 387 KSVVYESLRIEPPVASQYGRAKHDMVIESHDASFEIKEGELLYGFQPFATKDPKIFDRSE 446
Query: 553 EFVGDRFMGAEGEKLLKHVLWSNGPETATPTVNDKQCAGKDFVTLVSRLLVVELFLRYDS 374
EFV DRF+G EGEKLLKHVLWSNG ET P++N+KQCAGKDFV LVSRLL+VELFLRYDS
Sbjct: 447 EFVADRFIGEEGEKLLKHVLWSNGSETENPSINNKQCAGKDFVVLVSRLLLVELFLRYDS 506
Query: 373 FEIQVGTSPLGSAVTLTSLKRASF 302
FEI+VG SPLG+A+TLTSL+RASF
Sbjct: 507 FEIEVGASPLGAAITLTSLRRASF 530
>emb|CAB88032.1| allene oxide synthase [Lycopersicon esculentum]
Length = 534
Score = 228 bits (582), Expect = 5e-59
Identities = 107/144 (74%), Positives = 127/144 (87%)
Frame = -3
Query: 733 KSVVYEAFRVDPPVPLXFGRVRKDMVIESHDHAFRVKKGEMLFGYQPFATKDPKIFERAE 554
KSVVYE+ R++PPV +GR + DMVIESHD +F +K+GE+L+GYQPFATKDPKIF+R+E
Sbjct: 391 KSVVYESLRIEPPVASQYGRAKHDMVIESHDASFEIKEGELLYGYQPFATKDPKIFDRSE 450
Query: 553 EFVGDRFMGAEGEKLLKHVLWSNGPETATPTVNDKQCAGKDFVTLVSRLLVVELFLRYDS 374
EFV DRF G EGEKLLKHVLWSNG ET ++N+KQCAGKDFV LVSRLL+VELFLRYDS
Sbjct: 451 EFVADRFKGEEGEKLLKHVLWSNGSETENASINNKQCAGKDFVVLVSRLLLVELFLRYDS 510
Query: 373 FEIQVGTSPLGSAVTLTSLKRASF 302
FEI+VG SPLG+A+TLTSL+RASF
Sbjct: 511 FEIEVGASPLGAAITLTSLRRASF 534
>emb|CAC82911.1| allene oxide synthase [Nicotiana attenuata]
Length = 519
Score = 226 bits (576), Expect = 3e-58
Identities = 106/142 (74%), Positives = 123/142 (85%)
Frame = -3
Query: 733 KSVVYEAFRVDPPVPLXFGRVRKDMVIESHDHAFRVKKGEMLFGYQPFATKDPKIFERAE 554
KSVVYEA R+DPPV +GR ++D++IESHD F VKKGEMLFGYQPFAT+DPKIF+R +
Sbjct: 378 KSVVYEALRIDPPVASQYGRAKRDLMIESHDGVFEVKKGEMLFGYQPFATRDPKIFDRPD 437
Query: 553 EFVGDRFMGAEGEKLLKHVLWSNGPETATPTVNDKQCAGKDFVTLVSRLLVVELFLRYDS 374
EFV DRF+G EGEKLLKHVLWSNGPET +PTV +KQCAGKDFV LVSRLLV E FLRYD+
Sbjct: 438 EFVPDRFVGEEGEKLLKHVLWSNGPETESPTVENKQCAGKDFVVLVSRLLVTEFFLRYDT 497
Query: 373 FEIQVGTSPLGSAVTLTSLKRA 308
+I VGTSPLG+ +T+TSLKRA
Sbjct: 498 LDIDVGTSPLGAKITITSLKRA 519
>gb|AAO72741.1| allene oxide synthase [Citrus sinensis]
Length = 532
Score = 223 bits (568), Expect = 2e-57
Identities = 107/144 (74%), Positives = 126/144 (87%)
Frame = -3
Query: 733 KSVVYEAFRVDPPVPLXFGRVRKDMVIESHDHAFRVKKGEMLFGYQPFATKDPKIFERAE 554
KSVVYE R++PPV L +G+ ++D++I SH+ +F VK+GEMLFGYQPFATKDPKIFE+AE
Sbjct: 390 KSVVYEVLRMEPPVALQYGKAKRDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAE 449
Query: 553 EFVGDRFMGAEGEKLLKHVLWSNGPETATPTVNDKQCAGKDFVTLVSRLLVVELFLRYDS 374
EFV DRF+G EGEK+LKHVLWSNGPET P V +KQCAGKDFV L SRLL+VELFLRYDS
Sbjct: 450 EFVADRFVG-EGEKMLKHVLWSNGPETENPPVGNKQCAGKDFVVLASRLLLVELFLRYDS 508
Query: 373 FEIQVGTSPLGSAVTLTSLKRASF 302
F+IQVG S +GS+VTLTSLKRASF
Sbjct: 509 FDIQVGKSAIGSSVTLTSLKRASF 532
>emb|CAA63266.1| allene oxide synthase [Arabidopsis thaliana]
Length = 517
Score = 222 bits (566), Expect = 4e-57
Identities = 103/144 (71%), Positives = 125/144 (86%)
Frame = -3
Query: 733 KSVVYEAFRVDPPVPLXFGRVRKDMVIESHDHAFRVKKGEMLFGYQPFATKDPKIFERAE 554
KSVVYE R +PPV +GR +KD+VIESHD AF+VK GEML+GYQP AT+DPKIF+RA+
Sbjct: 374 KSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRAD 433
Query: 553 EFVGDRFMGAEGEKLLKHVLWSNGPETATPTVNDKQCAGKDFVTLVSRLLVVELFLRYDS 374
EFV +RF+G EGEKLL+HVLWSNGPET TPTV +KQCAGKDFV LV+RL V+E+F RYDS
Sbjct: 434 EFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDS 493
Query: 373 FEIQVGTSPLGSAVTLTSLKRASF 302
F+I+VGTSPLGS+V +SL++ASF
Sbjct: 494 FDIEVGTSPLGSSVNFSSLRKASF 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 679,117,588
Number of Sequences: 1393205
Number of extensions: 17250111
Number of successful extensions: 102094
Number of sequences better than 10.0: 2266
Number of HSP's better than 10.0 without gapping: 67266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88048
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
