Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003426A_C01 KMC003426A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176570.1| hypothetical protein; protein id: At1g63850.1 [... 200 2e-50
ref|NP_200813.1| putative protein; protein id: At5g60050.1 [Arab... 139 5e-32
ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arab... 128 7e-29
dbj|BAC10056.1| putative PRLI-interacting factor G [Oryza sativa... 99 6e-20
gb|AAM62951.1| unknown [Arabidopsis thaliana] 99 8e-20
>ref|NP_176570.1| hypothetical protein; protein id: At1g63850.1 [Arabidopsis
thaliana] gi|25338922|pir||F96663 hypothetical protein
T12P18.13 [imported] - Arabidopsis thaliana
gi|12325010|gb|AAG52452.1|AC010852_9 hypothetical
protein; 43750-42004 [Arabidopsis thaliana]
Length = 548
Score = 200 bits (508), Expect = 2e-50
Identities = 87/116 (75%), Positives = 102/116 (87%)
Frame = -2
Query: 739 VGIGKGQLLASKDARCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSW 560
VGIGKGQ+L K+ RCLLL+ WL PFYDDFGWMRRASKGLDR+LIEDGLSNTILTLPL+W
Sbjct: 432 VGIGKGQILTPKEVRCLLLRNWLTPFYDDFGWMRRASKGLDRYLIEDGLSNTILTLPLAW 491
Query: 559 QQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQEQTRQLRITSASIEN 392
QQE LAWF+RFLNS EDCPNIQRGFEVWWRRAFW+R + ++ +LR+T+++ EN
Sbjct: 492 QQEFFLAWFDRFLNSNEDCPNIQRGFEVWWRRAFWRRKEQSQEPARLRVTASATEN 547
>ref|NP_200813.1| putative protein; protein id: At5g60050.1 [Arabidopsis thaliana]
gi|8777344|dbj|BAA96934.1|
gb|AAF07368.1~gene_id:MGO3.3~similar to unknown protein
[Arabidopsis thaliana] gi|26450097|dbj|BAC42168.1|
unknown protein [Arabidopsis thaliana]
Length = 499
Score = 139 bits (349), Expect = 5e-32
Identities = 65/111 (58%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Frame = -2
Query: 739 VGIGKGQLLASKDARCLLLKTWLVPFYDDFGWMRR-ASKGLDRHLIEDGLSNTILTLPLS 563
VGIGKG++L +++ R +L TWL YDDFGWMRR +S+ LDR L+EDGLS TILTL L
Sbjct: 387 VGIGKGRILVNRETRFAVLNTWLEALYDDFGWMRRLSSRSLDRKLVEDGLSQTILTLSLR 446
Query: 562 WQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQEQTRQLRIT 410
QQ IL+ WF+RFL+ G+DCPN+QR FEVWWRRAF ++ + +L+IT
Sbjct: 447 QQQVILMKWFDRFLSKGDDCPNVQRAFEVWWRRAFIRQVLTEPDEPRLQIT 497
>ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arabidopsis thaliana]
gi|7485708|pir||T08399 hypothetical protein F18B3.60 -
Arabidopsis thaliana gi|4835229|emb|CAB42907.1| putative
protein [Arabidopsis thaliana]
gi|27754671|gb|AAO22779.1| unknown protein [Arabidopsis
thaliana] gi|28827604|gb|AAO50646.1| unknown protein
[Arabidopsis thaliana]
Length = 520
Score = 128 bits (322), Expect = 7e-29
Identities = 56/115 (48%), Positives = 77/115 (66%)
Frame = -2
Query: 739 VGIGKGQLLASKDARCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSW 560
+GIG+G+LL SKD R LLL TWL P ++D+ W++ + D L+E+G+ TILTLPL
Sbjct: 405 IGIGRGELLPSKDTRLLLLTTWLQPLFNDYNWLQHGCRSFDGKLVEEGIGRTILTLPLED 464
Query: 559 QQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQEQTRQLRITSASIE 395
QQ ILL+W FLN G+ CPN+QR FEVWWRR+F + +++ + S S E
Sbjct: 465 QQSILLSWLGSFLNGGDGCPNLQRAFEVWWRRSFIRPYSDRQANGSCQTDSTSKE 519
>dbj|BAC10056.1| putative PRLI-interacting factor G [Oryza sativa (japonica
cultivar-group)] gi|24059874|dbj|BAC21341.1| putative
PRLI-interacting factor G [Oryza sativa (japonica
cultivar-group)]
Length = 564
Score = 99.0 bits (245), Expect = 6e-20
Identities = 43/100 (43%), Positives = 61/100 (61%)
Frame = -2
Query: 739 VGIGKGQLLASKDARCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSW 560
+ +GKG++ + R LL W P DFGW++R SKGLD +E+ L +LTLPL
Sbjct: 463 IALGKGKVQCRGELRSLLFYGWFSPMLLDFGWLQRCSKGLDVRSLEENLGQALLTLPLKQ 522
Query: 559 QQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGE 440
QQ + WF F + G +CPN+ R F+VWWRR+F + + E
Sbjct: 523 QQCLFEEWFQCFASKGSECPNLTRAFQVWWRRSFVRSSVE 562
>gb|AAM62951.1| unknown [Arabidopsis thaliana]
Length = 543
Score = 98.6 bits (244), Expect = 8e-20
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = -2
Query: 739 VGIGKGQLLASKDARCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSW 560
+ +GK ++ +AR L++ W P DFGW++R KGLD +E+G+ T+LTLP+
Sbjct: 440 IAMGKRRVQCGGEARAGLVEVWFKPMLVDFGWLQRCKKGLDMREVEEGMGQTLLTLPVKQ 499
Query: 559 QQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF 458
Q ++ + WF F G +CPN+ + F++WWRR+F
Sbjct: 500 QYQVFMEWFRWFSKHGTECPNLSKAFQIWWRRSF 533
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 647,525,138
Number of Sequences: 1393205
Number of extensions: 14559864
Number of successful extensions: 32283
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 31045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32274
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
