Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003424A_C01 KMC003424A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21893.1| hypothetical protein [Plasmodium yoelii yoelii] 31 5.7
gb|AAM47174.1|AF420309_1 reticulocyte binding protein-like prote... 30 9.7
gb|EAA18431.1| hypothetical protein [Plasmodium yoelii yoelii] 30 9.7
ref|NP_110139.1| competence locus operon protein 3 homolog; simi... 30 9.7
gb|AAM47175.1|AF420310_1 reticulocyte binding protein-like prote... 30 9.7
>gb|EAA21893.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 742
Score = 31.2 bits (69), Expect = 5.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 22 ETQATCLYKILHFNLQSIQKYIDQAFYHTTNNKNKSPIR 138
ET +C +LHF + + Y + F+H NKN + ++
Sbjct: 20 ETYLSCFDYVLHFITKIVYPYYNFLFFHQVKNKNAADVQ 58
>gb|AAM47174.1|AF420309_1 reticulocyte binding protein-like protein 4 [Plasmodium falciparum]
Length = 1711
Score = 30.4 bits (67), Expect = 9.7
Identities = 19/62 (30%), Positives = 31/62 (49%)
Frame = +1
Query: 1 KTKQNLDETQATCLYKILHFNLQSIQKYIDQAFYHTTNNKNKSPIREPMVVNTLNPRYVD 180
K QN+ E LY+ + NL++I++ I Q TT N+ I + + +N +Y D
Sbjct: 734 KPIQNISEHTIYTLYQEIKTNLENIEQKIMQNIQQTT---NRLKINIKKIFDQINQKYDD 790
Query: 181 FT 186
T
Sbjct: 791 LT 792
>gb|EAA18431.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 307
Score = 30.4 bits (67), Expect = 9.7
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = +1
Query: 37 CLYKILHFNLQSIQKYIDQAFYHTTNNKNKSPIREPMVVNTLNPRYV 177
C Y I+ +QSI IDQ FY ++N N R+ ++ N + ++
Sbjct: 137 CYYPIIQLIIQSI---IDQIFYSLSHNSNNMNERKKLIENEIKTYFL 180
>ref|NP_110139.1| competence locus operon protein 3 homolog; similar to Swiss-Prot
Accession Number P39695, from B. subtilis [Mycoplasma
pneumoniae] gi|2496382|sp|Q50361|Y316_MYCPN Hypothetical
protein MG316 homolog (H08_orf369)
gi|2146087|pir||S73716 come3 protein - Mycoplasma
pneumoniae (strain ATCC 29342) gi|639786|gb|AAA61693.1|
ORF6 [Mycoplasma pneumoniae] gi|1674071|gb|AAB96038.1|
competence locus operon protein 3 homolog; similar to
Swiss-Prot Accession Number P39695, from B. subtilis
[Mycoplasma pneumoniae]
Length = 369
Score = 30.4 bits (67), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 177 HISGIKGIYHHWLADRAFIFVVGGVVKCLIYVFL 76
H+S + G+ WL R +I + G V L+Y+FL
Sbjct: 131 HLSFLFGVMERWLYKRFYINKITGFVMLLLYLFL 164
>gb|AAM47175.1|AF420310_1 reticulocyte binding protein-like protein 4 [Plasmodium falciparum]
Length = 1713
Score = 30.4 bits (67), Expect = 9.7
Identities = 19/62 (30%), Positives = 31/62 (49%)
Frame = +1
Query: 1 KTKQNLDETQATCLYKILHFNLQSIQKYIDQAFYHTTNNKNKSPIREPMVVNTLNPRYVD 180
K QN+ E LY+ + NL++I++ I Q TT N+ I + + +N +Y D
Sbjct: 734 KPIQNISEHTIYTLYQEIKTNLENIEQKIMQNIQQTT---NRLKINIKKIFDQINQKYDD 790
Query: 181 FT 186
T
Sbjct: 791 LT 792
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,267,080
Number of Sequences: 1393205
Number of extensions: 7675372
Number of successful extensions: 15226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15224
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
