Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003415A_C01 KMC003415A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum] 236 2e-61
ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, suppor... 229 2e-59
ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: A... 224 6e-58
gb|AAK59766.1| unknown protein [Arabidopsis thaliana] 223 2e-57
pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA... 218 4e-56
>emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum]
Length = 389
Score = 236 bits (603), Expect = 2e-61
Identities = 123/138 (89%), Positives = 129/138 (93%)
Frame = -3
Query: 658 NVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDF 479
N GS AGAG+LDFLRNS QFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQ+HQ DF
Sbjct: 255 NAGSN-AGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDF 313
Query: 478 LRLINEPVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNK 299
LRLINEPVE GEGN+LGQ AG A+PQAV+VTPEEREAIERLEAMGFDRA VLEVYFACNK
Sbjct: 314 LRLINEPVE-GEGNVLGQTAG-AIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNK 371
Query: 298 NEELAANYLLDHMHEFDE 245
NEELAANYLLDH+HEFDE
Sbjct: 372 NEELAANYLLDHLHEFDE 389
>ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, supported by cDNA:
gi_14517453 [Arabidopsis thaliana]
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis
thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17
[Arabidopsis thaliana] gi|21360453|gb|AAM47342.1|
AT3g02540/F16B3_17 [Arabidopsis thaliana]
Length = 419
Score = 229 bits (585), Expect = 2e-59
Identities = 118/141 (83%), Positives = 127/141 (89%), Gaps = 3/141 (2%)
Frame = -3
Query: 658 NVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDF 479
NVG P GAG+LDFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP+LMRLIQDHQ DF
Sbjct: 280 NVGGNP-GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADF 338
Query: 478 LRLINEPVEGG--EGNILGQL-AGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFA 308
LRLINEPVEGG GN+LGQ+ AG PQA+ VT EEREAIERLEAMGF+RA VLEV+FA
Sbjct: 339 LRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFA 398
Query: 307 CNKNEELAANYLLDHMHEFDE 245
CNKNEELAANYLLDHMHEF+E
Sbjct: 399 CNKNEELAANYLLDHMHEFEE 419
>ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: At5g38470.1,
supported by cDNA: 36697., supported by cDNA:
gi_14335003, supported by cDNA: gi_16648837, supported
by cDNA: gi_19548080 [Arabidopsis thaliana]
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23
homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis
thaliana] gi|19548081|gb|AAL87405.1| At5g38470/At5g38470
[Arabidopsis thaliana] gi|21593157|gb|AAM65106.1| DNA
repair protein RAD23 homolog [Arabidopsis thaliana]
Length = 378
Score = 224 bits (572), Expect = 6e-58
Identities = 115/133 (86%), Positives = 124/133 (92%)
Frame = -3
Query: 640 AGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINE 461
AGAG+LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINE
Sbjct: 248 AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307
Query: 460 PVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAA 281
PVE GE N++ QL AAMPQAV+VTPEEREAIERLE MGFDRA VLEV+FACNKNEELAA
Sbjct: 308 PVE-GEENVMEQLE-AAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAA 365
Query: 280 NYLLDHMHEFDEQ 242
NYLLDHMHEF++Q
Sbjct: 366 NYLLDHMHEFEDQ 378
>gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 223 bits (567), Expect = 2e-57
Identities = 114/133 (85%), Positives = 123/133 (91%)
Frame = -3
Query: 640 AGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINE 461
AGAG+LDFLRNS QFQALRAMVQANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINE
Sbjct: 248 AGAGNLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307
Query: 460 PVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAA 281
PVE GE N++ QL AAMPQAV+VTPEEREAIERLE MGFDRA VLEV+FACNKNEELAA
Sbjct: 308 PVE-GEENVMEQLE-AAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAA 365
Query: 280 NYLLDHMHEFDEQ 242
NYLLDHMHEF++Q
Sbjct: 366 NYLLDHMHEFEDQ 378
>pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA72741.1| RAD23,
isoform I [Daucus carota]
Length = 382
Score = 218 bits (556), Expect = 4e-56
Identities = 110/137 (80%), Positives = 123/137 (89%)
Frame = -3
Query: 658 NVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDF 479
++GS AGAG+LDFLR +QQFQALRAMVQ+NPQILQPMLQELGKQNPHLMRLIQ+HQ DF
Sbjct: 252 DMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQADF 311
Query: 478 LRLINEPVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNK 299
L+LINEP+EGGE N+LG PQA+SVTPEER+AIERLEAMGFDR VLEV+FACNK
Sbjct: 312 LQLINEPMEGGE-NLLGH-----GPQAISVTPEERDAIERLEAMGFDRELVLEVFFACNK 365
Query: 298 NEELAANYLLDHMHEFD 248
NEELAANYLLDHMHEF+
Sbjct: 366 NEELAANYLLDHMHEFE 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,782,572
Number of Sequences: 1393205
Number of extensions: 13727848
Number of successful extensions: 42540
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 40471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42458
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
