Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003406A_C01 KMC003406A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564051.1| expressed protein; protein id: At1g18450.1, sup... 199 2e-50
gb|AAM65324.1| unknown [Arabidopsis thaliana] 199 2e-50
pir||C86318 protein F15H18.8 [imported] - Arabidopsis thaliana g... 199 2e-50
gb|AAM53244.1|AF507912_1 actin-related protein 4 [Arabidopsis th... 199 2e-50
sp|Q9Z2N8|B53A_MOUSE 53 kDa BRG1-associated factor A (Actin-rela... 120 1e-26
>ref|NP_564051.1| expressed protein; protein id: At1g18450.1, supported by cDNA:
38419. [Arabidopsis thaliana]
gi|21489918|tpg|DAA00027.1| TPA: actin-related protein
4; AtARP4 [Arabidopsis thaliana]
Length = 441
Score = 199 bits (507), Expect = 2e-50
Identities = 97/105 (92%), Positives = 103/105 (97%)
Frame = -2
Query: 626 LPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASG 447
LPHMV+ESINKCDVDIRREL+SSILLAGGT+SMQQLKERLEKDL+EESP +ARVKVLASG
Sbjct: 337 LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASG 396
Query: 446 NATERRFSVWIGGSILASLGSFQQMWFSRSEYEEHGASYIQRKCP 312
N TERRFSVWIGGSILASLGSFQQMWFS+SEYEEHGASYIQRKCP
Sbjct: 397 NTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
>gb|AAM65324.1| unknown [Arabidopsis thaliana]
Length = 441
Score = 199 bits (507), Expect = 2e-50
Identities = 97/105 (92%), Positives = 103/105 (97%)
Frame = -2
Query: 626 LPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASG 447
LPHMV+ESINKCDVDIRREL+SSILLAGGT+SMQQLKERLEKDL+EESP +ARVKVLASG
Sbjct: 337 LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASG 396
Query: 446 NATERRFSVWIGGSILASLGSFQQMWFSRSEYEEHGASYIQRKCP 312
N TERRFSVWIGGSILASLGSFQQMWFS+SEYEEHGASYIQRKCP
Sbjct: 397 NTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
>pir||C86318 protein F15H18.8 [imported] - Arabidopsis thaliana
gi|6714302|gb|AAF25998.1|AC013354_17 F15H18.8
[Arabidopsis thaliana]
Length = 777
Score = 199 bits (507), Expect = 2e-50
Identities = 97/105 (92%), Positives = 103/105 (97%)
Frame = -2
Query: 626 LPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASG 447
LPHMV+ESINKCDVDIRREL+SSILLAGGT+SMQQLKERLEKDL+EESP +ARVKVLASG
Sbjct: 673 LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASG 732
Query: 446 NATERRFSVWIGGSILASLGSFQQMWFSRSEYEEHGASYIQRKCP 312
N TERRFSVWIGGSILASLGSFQQMWFS+SEYEEHGASYIQRKCP
Sbjct: 733 NTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 777
>gb|AAM53244.1|AF507912_1 actin-related protein 4 [Arabidopsis thaliana]
Length = 442
Score = 199 bits (507), Expect = 2e-50
Identities = 97/105 (92%), Positives = 103/105 (97%)
Frame = -2
Query: 626 LPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASG 447
LPHMV+ESINKCDVDIRREL+SSILLAGGT+SMQQLKERLEKDL+EESP +ARVKVLASG
Sbjct: 338 LPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASG 397
Query: 446 NATERRFSVWIGGSILASLGSFQQMWFSRSEYEEHGASYIQRKCP 312
N TERRFSVWIGGSILASLGSFQQMWFS+SEYEEHGASYIQRKCP
Sbjct: 398 NTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 442
>sp|Q9Z2N8|B53A_MOUSE 53 kDa BRG1-associated factor A (Actin-related protein Baf53a)
gi|12805075|gb|AAH01994.1| actin-like 6 [Mus musculus]
Length = 429
Score = 120 bits (301), Expect = 1e-26
Identities = 52/103 (50%), Positives = 75/103 (72%)
Frame = -2
Query: 620 HMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNA 441
H+V S+ CD+DIR L+ S+++AGG +Q +RL ++L +++P + R+K++A+
Sbjct: 327 HVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTT 386
Query: 440 TERRFSVWIGGSILASLGSFQQMWFSRSEYEEHGASYIQRKCP 312
ERRFS WIGGSILASLG+FQQMW S+ EYEE G ++RKCP
Sbjct: 387 VERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKCP 429
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,984,628
Number of Sequences: 1393205
Number of extensions: 10185317
Number of successful extensions: 24306
Number of sequences better than 10.0: 1272
Number of HSP's better than 10.0 without gapping: 22669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23203
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
