Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003401A_C01 KMC003401A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02434 DNA binding protein EREBP-4 - common tobacco gi|1208... 134 5e-35
dbj|BAA97124.1| ethylene-responsive element binding factor [Nico... 130 1e-34
ref|NP_568679.1| ethylene responsive element binding factor 5 (A... 142 5e-33
dbj|BAA97157.1| ethylene responsive element binding factor 5 (AT... 142 5e-33
ref|NP_200968.1| DNA binding protein - like; protein id: At5g616... 122 9e-31
>pir||T02434 DNA binding protein EREBP-4 - common tobacco
gi|1208497|dbj|BAA07323.1| ethylene-responsive element
binding protein [Nicotiana tabacum]
Length = 291
Score = 134 bits (338), Expect(2) = 5e-35
Identities = 70/101 (69%), Positives = 79/101 (77%), Gaps = 7/101 (6%)
Frame = -2
Query: 616 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPL 437
HYRGVRQRPWGKFAAEIRDPN++G+RVWLGTFDTAIEAAKAYDRAAFKLRGSKAI+NFPL
Sbjct: 144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPL 203
Query: 436 DVAAAAASGD-----GESDRKRRR--EEEVVEVKAVVKREK 335
+VA + S RKR R E E + +K VKRE+
Sbjct: 204 EVANFKQQDNEILQPANSGRKRMRETENEEIVIKKEVKREE 244
Score = 35.0 bits (79), Expect(2) = 5e-35
Identities = 15/24 (62%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = -1
Query: 302 LTPSIWTGVWD-SDVKGIFTVPPL 234
LTPS W+ +W+ D KGIF VPPL
Sbjct: 253 LTPSSWSAIWEGEDGKGIFEVPPL 276
>dbj|BAA97124.1| ethylene-responsive element binding factor [Nicotiana sylvestris]
Length = 282
Score = 130 bits (327), Expect(2) = 1e-34
Identities = 69/103 (66%), Positives = 79/103 (75%), Gaps = 6/103 (5%)
Frame = -2
Query: 616 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPL 437
HYRGVRQRPWGKFAAEIRDPN++G+RVWLGTFDTAIEAAKAYDRAA+KLRGSKAI+NFPL
Sbjct: 137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPL 196
Query: 436 DVAAAAASGDGE------SDRKRRREEEVVEVKAVVKREKTTE 326
+VA + E S RKR R E V E + V+ +E E
Sbjct: 197 EVANFKQEFNNEIRPLVNSSRKRVR-ETVNEEQLVINKEMKIE 238
Score = 38.1 bits (87), Expect(2) = 1e-34
Identities = 17/24 (70%), Positives = 19/24 (78%), Gaps = 1/24 (4%)
Frame = -1
Query: 302 LTPSIWTGVWDS-DVKGIFTVPPL 234
LTPS W+ +WDS D KGIF VPPL
Sbjct: 247 LTPSSWSAIWDSGDGKGIFEVPPL 270
>ref|NP_568679.1| ethylene responsive element binding factor 5 (AtERF5); protein id:
At5g47230.1, supported by cDNA: gi_14326511, supported
by cDNA: gi_18700209, supported by cDNA: gi_3434974
[Arabidopsis thaliana] gi|7531111|sp|O80341|ERF5_ARATH
Ethylene responsive element binding factor 5 (AtERF5)
gi|25453553|pir||T52020 ethylene responsive element
binding factor 5 [validated] - Arabidopsis thaliana
gi|3434975|dbj|BAA32422.1| ethylene responsive element
binding factor 5 [Arabidopsis thaliana]
gi|14326512|gb|AAK60301.1|AF385709_1 AT5g47230/MQL5_9
[Arabidopsis thaliana] gi|18700210|gb|AAL77715.1|
AT5g47230/MQL5_9 [Arabidopsis thaliana]
gi|26450221|dbj|BAC42229.1| putative ethylene responsive
element binding factor 5 ATERF5 [Arabidopsis thaliana]
Length = 300
Score = 142 bits (357), Expect = 5e-33
Identities = 82/148 (55%), Positives = 94/148 (63%), Gaps = 11/148 (7%)
Frame = -2
Query: 616 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPL 437
HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAA+AYD AAF+LRGSKAILNFPL
Sbjct: 155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPL 214
Query: 436 DVAAAAASGD-GESDRKRRREEEVVEVKAVVKREKTTELGS*GDAA*RRLFGPGYGTVM* 260
+V D GE RKR +E+V V+ V+K E++ ++ G + V
Sbjct: 215 EVGKWKPRADEGEKKRKRDDDEKVTVVEKVLKTEQSVDVNG----------GETFPFVTS 264
Query: 259 R----------GFSRCRRLSPLSPLPAF 206
GF LSPLSP P F
Sbjct: 265 NLTELCDWDLTGFLNFPLLSPLSPHPPF 292
>dbj|BAA97157.1| ethylene responsive element binding factor 5 (ATERF5) [Arabidopsis
thaliana]
Length = 329
Score = 142 bits (357), Expect = 5e-33
Identities = 82/148 (55%), Positives = 94/148 (63%), Gaps = 11/148 (7%)
Frame = -2
Query: 616 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPL 437
HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAA+AYD AAF+LRGSKAILNFPL
Sbjct: 184 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPL 243
Query: 436 DVAAAAASGD-GESDRKRRREEEVVEVKAVVKREKTTELGS*GDAA*RRLFGPGYGTVM* 260
+V D GE RKR +E+V V+ V+K E++ ++ G + V
Sbjct: 244 EVGKWKPRADEGEKKRKRDDDEKVTVVEKVLKTEQSVDVNG----------GETFPFVTS 293
Query: 259 R----------GFSRCRRLSPLSPLPAF 206
GF LSPLSP P F
Sbjct: 294 NLTELCDWDLTGFLNFPLLSPLSPHPPF 321
>ref|NP_200968.1| DNA binding protein - like; protein id: At5g61600.1, supported by
cDNA: 92102., supported by cDNA: gi_13430473, supported
by cDNA: gi_15809920 [Arabidopsis thaliana]
gi|9758475|dbj|BAB09004.1| contains similarity to
ethylene responsive element binding
factor~gene_id:K11J9.13 [Arabidopsis thaliana]
gi|15809921|gb|AAL06888.1| AT5g61600/k11j9_120
[Arabidopsis thaliana] gi|23297105|gb|AAN13094.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 241
Score = 122 bits (307), Expect(2) = 9e-31
Identities = 61/107 (57%), Positives = 76/107 (71%), Gaps = 10/107 (9%)
Frame = -2
Query: 616 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPL 437
HYRGVR+RPWGK+AAEIRDPNK+G R+WLGT+DTA+EA +AYD+AAF+LRG KAILNFPL
Sbjct: 87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146
Query: 436 DVAAAAASGDGE-----SDRKRRR-----EEEVVEVKAVVKREKTTE 326
DV + + GE RKR + EE+ VK + T+E
Sbjct: 147 DVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVKVEEEESNTSE 193
Score = 32.7 bits (73), Expect(2) = 9e-31
Identities = 17/36 (47%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Frame = -1
Query: 302 LTPSIWTGVWDSDV-KGIFTVPPLVAVISPSGFSFT 198
LTPS W G WD GIF++PPL SP+ +F+
Sbjct: 205 LTPSSWMGFWDVGAGDGIFSIPPL----SPTSPNFS 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,595,435
Number of Sequences: 1393205
Number of extensions: 14281999
Number of successful extensions: 67309
Number of sequences better than 10.0: 429
Number of HSP's better than 10.0 without gapping: 50620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64573
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
