Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003390A_C01 KMC003390A_c01
(827 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75575.1| MtN21 [Medicago truncatula] 196 3e-49
dbj|BAB92246.1| nodulin-like protein [Oryza sativa (japonica cul... 156 3e-37
ref|NP_196322.1| MtN21 nodulin protein-like; protein id: At5g070... 155 7e-37
ref|NP_181483.1| nodulin-like protein; protein id: At2g39510.1 [... 125 6e-28
ref|NP_181622.1| putative integral membrane protein nodulin; pro... 123 4e-27
>emb|CAA75575.1| MtN21 [Medicago truncatula]
Length = 394
Score = 196 bits (498), Expect = 3e-49
Identities = 102/140 (72%), Positives = 117/140 (82%), Gaps = 1/140 (0%)
Frame = -1
Query: 827 WTIGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAE 648
WTIGWDMNLLAAAYAGIVTSSISYY+QGLVI+KKGPVFAT+FSPLMMIIVAIMG FILAE
Sbjct: 251 WTIGWDMNLLAAAYAGIVTSSISYYIQGLVIKKKGPVFATSFSPLMMIIVAIMGFFILAE 310
Query: 647 QIFLGGIIGSILIVIGLYSVLWGKHKEQVETKVG-EDIALPVKSGQFNGNQGTPVDSTDQ 471
Q+FLG +IGSIL+VIGLYSVLWGKHKEQVE KV +DI LP+KS + NGN G S D+
Sbjct: 311 QLFLGSVIGSILVVIGLYSVLWGKHKEQVECKVSPDDIPLPIKSARINGNMGAFSASFDK 370
Query: 470 CCDEAKSNEKVEANKNSSIV 411
E K ++K E+N + I+
Sbjct: 371 -HSEVKLDQKEESNISLVII 389
>dbj|BAB92246.1| nodulin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 156 bits (395), Expect = 3e-37
Identities = 84/129 (65%), Positives = 97/129 (75%), Gaps = 2/129 (1%)
Frame = -1
Query: 827 WTIGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAE 648
W IG+DMNLLAAAYAGIVTSSI+YYVQGLVI+K GPVFA+AFSPLMMIIVA MGSFILAE
Sbjct: 255 WAIGFDMNLLAAAYAGIVTSSIAYYVQGLVIQKTGPVFASAFSPLMMIIVAGMGSFILAE 314
Query: 647 QIFLGGIIGSILIVIGLYSVLWGKHKEQVETKVGEDIALPV--KSGQFNGNQGTPVDSTD 474
+I+LGG++G++LIV+GLYSVLWGKHKE E + LPV K T V D
Sbjct: 315 KIYLGGVLGAVLIVVGLYSVLWGKHKETQEQDAAM-MELPVASKGNDAEFTAATVVGDDD 373
Query: 473 QCCDEAKSN 447
D K+N
Sbjct: 374 DAADCKKAN 382
>ref|NP_196322.1| MtN21 nodulin protein-like; protein id: At5g07050.1 [Arabidopsis
thaliana] gi|9759561|dbj|BAB11163.1| MtN21 nodulin
protein-like [Arabidopsis thaliana]
Length = 402
Score = 155 bits (392), Expect = 7e-37
Identities = 72/91 (79%), Positives = 85/91 (93%)
Frame = -1
Query: 827 WTIGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAE 648
W IGWDMNLLAAAY+GIV SSISYYVQG+V++K+GPVFATAFSPLMM+IVA+MGSF+LAE
Sbjct: 257 WRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAE 316
Query: 647 QIFLGGIIGSILIVIGLYSVLWGKHKEQVET 555
+IFLGG+IG++LIVIGLY+VLWGK KE T
Sbjct: 317 KIFLGGVIGAVLIVIGLYAVLWGKQKENQVT 347
>ref|NP_181483.1| nodulin-like protein; protein id: At2g39510.1 [Arabidopsis
thaliana] gi|7485410|pir||T00561 nodulin-like protein
[imported] - Arabidopsis thaliana
gi|3355480|gb|AAC27842.1| nodulin-like protein
[Arabidopsis thaliana]
Length = 374
Score = 125 bits (315), Expect = 6e-28
Identities = 68/142 (47%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Frame = -1
Query: 827 WTIGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAE 648
W I D LLAA Y G++ S I YYVQG++++ +GPVF TAF+PL M+IVAI+GS ILAE
Sbjct: 240 WAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAE 299
Query: 647 QIFLGGIIGSILIVIGLYSVLWGKHKEQVETKVGE-DIALPVKSGQFNGNQGTPVDSTDQ 471
+FLG I+G+I+IV+GLYSVLWGK K++ + + D LP+ ST Q
Sbjct: 300 VMFLGRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPL--------------STPQ 345
Query: 470 CCDEAKSNEKVEANKNSSIVIS 405
+K+N K++ N ++S+VIS
Sbjct: 346 IVLPSKANAKMDTN-DASVVIS 366
>ref|NP_181622.1| putative integral membrane protein nodulin; protein id: At2g40900.1
[Arabidopsis thaliana] gi|7487973|pir||T00754 probable
integral membrane protein nodulin At2g40900 [imported] -
Arabidopsis thaliana gi|2623304|gb|AAB86450.1| putative
integral membrane protein nodulin [Arabidopsis thaliana]
Length = 400
Score = 123 bits (308), Expect = 4e-27
Identities = 67/144 (46%), Positives = 100/144 (68%), Gaps = 8/144 (5%)
Frame = -1
Query: 821 IGWDMNLLAAAYAGIVTSSISYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAEQI 642
IG+DMNLLA+AYAGI++SSI+YYVQGL++++KGPVF TAF+PL+++IV+IM F+L + I
Sbjct: 239 IGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGI 298
Query: 641 FLGG------IIGSILIVIGLYSVLWGKH-KEQVETKVGEDIALPVKSGQFNGNQG-TPV 486
+LGG +IG +++++G+Y+VLWGKH + E ED + VK +GN G T +
Sbjct: 299 YLGGYVNNNRVIGVVVLMVGVYAVLWGKHVDDDGEETRHEDNVVAVKC--CSGNNGLTIM 356
Query: 485 DSTDQCCDEAKSNEKVEANKNSSI 414
D+ +E K + K SS+
Sbjct: 357 PKIDEADEEDVETGKATSEKESSV 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 684,341,776
Number of Sequences: 1393205
Number of extensions: 15011415
Number of successful extensions: 38230
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 36706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38189
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42643890261
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
