Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003387A_C01 KMC003387A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63614.1| unknown [Arabidopsis thaliana] 99 3e-20
ref|NP_566734.1| expressed protein; protein id: At3g23620.1, sup... 99 3e-20
sp|Q9AWM9|U170_ORYSA Hypothetical protein P0504D03.20 gi|1316137... 89 3e-17
ref|NP_594369.1| hypothetical protein [Schizosaccharomyces pombe... 44 0.002
ref|XP_166303.1| similar to RIKEN cDNA 2810470K21 gene [Mus musc... 40 0.014
>gb|AAM63614.1| unknown [Arabidopsis thaliana]
Length = 313
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/89 (55%), Positives = 66/89 (74%)
Frame = -2
Query: 540 DLVIRRHRPPNESIRKEAMRITREKPKKKEKNVKGDPLEGKIGNVYIPDQKIGEMALPNL 361
DLVIRR+R PN+S+ KEAMR +++KPKKKEKNV D + GK G +Y+PDQK+ EM L +
Sbjct: 225 DLVIRRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDK 284
Query: 360 AKGVKRERREAKRKNQNDEQAPKRKKEEE 274
+KG KRER++AK K++ + A K K E
Sbjct: 285 SKGSKRERKDAKLKHKEETVAKKMKVSSE 313
>ref|NP_566734.1| expressed protein; protein id: At3g23620.1, supported by cDNA:
25758., supported by cDNA: gi_17979360 [Arabidopsis
thaliana] gi|18203245|sp|Q9LUG5|U170_ARATH Hypothetical
protein At3g23620 gi|9294519|dbj|BAB02781.1|
emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
gi|17979361|gb|AAL49906.1| unknown protein [Arabidopsis
thaliana] gi|21689701|gb|AAM67472.1| unknown protein
[Arabidopsis thaliana]
Length = 314
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/89 (55%), Positives = 66/89 (74%)
Frame = -2
Query: 540 DLVIRRHRPPNESIRKEAMRITREKPKKKEKNVKGDPLEGKIGNVYIPDQKIGEMALPNL 361
DLVIRR+R PN+S+ KEAMR +++KPKKKEKNV D + GK G +Y+PDQK+ EM L +
Sbjct: 226 DLVIRRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDK 285
Query: 360 AKGVKRERREAKRKNQNDEQAPKRKKEEE 274
+KG KRER++AK K++ + A K K E
Sbjct: 286 SKGSKRERKDAKLKHKEETVAKKMKVSSE 314
>sp|Q9AWM9|U170_ORYSA Hypothetical protein P0504D03.20 gi|13161376|dbj|BAB32971.1|
P0504D03.20 [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 89.0 bits (219), Expect = 3e-17
Identities = 48/89 (53%), Positives = 62/89 (68%)
Frame = -2
Query: 540 DLVIRRHRPPNESIRKEAMRITREKPKKKEKNVKGDPLEGKIGNVYIPDQKIGEMALPNL 361
DLV+RRHR P ES++KEAM+ KK KNV DP+ GK+G VYIPDQ+I +M+L N
Sbjct: 227 DLVVRRHRYPVESLKKEAMKTADHA--KKMKNVTKDPVHGKLGKVYIPDQQIAKMSLSND 284
Query: 360 AKGVKRERREAKRKNQNDEQAPKRKKEEE 274
KG+KRERREAK+ N + + K+K E
Sbjct: 285 VKGLKRERREAKK---NKDHSKKQKINPE 310
>ref|NP_594369.1| hypothetical protein [Schizosaccharomyces pombe]
gi|18203512|sp|Q9UUG1|YFT8_SCHPO Hypothetical protein
C926.08c in chromosome I gi|7491288|pir||T39206
hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe) gi|5824207|emb|CAB54156.1|
hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = -2
Query: 540 DLVIRRHRPPNESIRKEAMRITREKPKKKEKNVKGDPLEGKIGNVYIPDQKIGEMALPNL 361
D IRR +P + +EA++ + + K +KNV D + K+G +++ Q +G + +
Sbjct: 228 DFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKM 287
Query: 360 AKGVKRERREAKRKNQNDE 304
KG+KR E + ++N+E
Sbjct: 288 -KGLKRSVEE-REDSENEE 304
>ref|XP_166303.1| similar to RIKEN cDNA 2810470K21 gene [Mus musculus] [Homo sapiens]
gi|22268137|gb|AAH35314.1| hypothetical protein FLJ21087
[Homo sapiens]
Length = 306
Score = 40.4 bits (93), Expect = 0.014
Identities = 24/87 (27%), Positives = 48/87 (54%)
Frame = -2
Query: 540 DLVIRRHRPPNESIRKEAMRITREKPKKKEKNVKGDPLEGKIGNVYIPDQKIGEMALPNL 361
DLV+RR ++ + K +M++ + KK+KN+ D G +++ Q + ++ +
Sbjct: 222 DLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQTRKM 281
Query: 360 AKGVKRERREAKRKNQNDEQAPKRKKE 280
KG+K +R A+R ++ E+ KR K+
Sbjct: 282 -KGLK--KRPAERITEDHEKKSKRIKK 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,035,719
Number of Sequences: 1393205
Number of extensions: 9858147
Number of successful extensions: 32848
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 28641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31620
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
