Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003374A_C01 KMC003374A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65017.1| P0498E12.13 [Oryza sativa (japonica cultivar-gro... 107 3e-27
dbj|BAB09170.1| gene_id:MFC19.9~unknown protein [Arabidopsis tha... 117 8e-26
ref|NP_568645.1| expressed protein; protein id: At5g45420.1, sup... 117 8e-26
ref|NP_187752.1| putative cell division related protein; protein... 64 1e-09
ref|NP_196229.1| cell division related protein-like; protein id:... 63 2e-09
>dbj|BAC65017.1| P0498E12.13 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 107 bits (266), Expect(2) = 3e-27
Identities = 60/109 (55%), Positives = 69/109 (63%), Gaps = 13/109 (11%)
Frame = -1
Query: 486 GRKEATIRTRYEQFLKKRKAADKR-------------GGGEEEEGKVEEETNWSNGEDIA 346
G A ++QFL+KRK D R GGGE +G +WS G+D A
Sbjct: 219 GGGAAAAGASFDQFLRKRKPLDPRSEATDAGSGNAGGGGGESGDG------SWSAGDDRA 272
Query: 345 LLNALKAFPKDAPMRWEKVAVAVPGKSKAACVKRVAELKKGFRSSKGAS 199
LLNALK FPKD MRWEKVAVAVPGK+KAAC+KRV ELK+ FRSSK AS
Sbjct: 273 LLNALKEFPKDTAMRWEKVAVAVPGKTKAACMKRVTELKRDFRSSKAAS 321
Score = 36.6 bits (83), Expect(2) = 3e-27
Identities = 17/26 (65%), Positives = 19/26 (72%)
Frame = -3
Query: 562 RWEAIAAAFGGRHKAESVIKKSKELG 485
RWE IAAAFGGR ESVI+ +K G
Sbjct: 195 RWEKIAAAFGGRRTPESVIRAAKSGG 220
Score = 35.0 bits (79), Expect = 0.65
Identities = 24/71 (33%), Positives = 33/71 (45%)
Frame = -1
Query: 411 GGEEEEGKVEEETNWSNGEDIALLNALKAFPKDAPMRWEKVAVAVPGKSKAACVKRVAEL 232
GGE VE+ W++ E L + P P RWEK+A A G+ V R A+
Sbjct: 163 GGEA----VEDAGEWTDQEMDILRRQMVKHPAGEPQRWEKIAAAFGGRRTPESVIRAAK- 217
Query: 231 KKGFRSSKGAS 199
G ++ GAS
Sbjct: 218 SGGGAAAAGAS 228
>dbj|BAB09170.1| gene_id:MFC19.9~unknown protein [Arabidopsis thaliana]
Length = 352
Score = 117 bits (294), Expect = 8e-26
Identities = 66/99 (66%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Frame = -1
Query: 486 GRKEATIRTRYEQFLKKRKAADKRGGGEEEE----GKVEEETN--WSNGEDIALLNALKA 325
G K+ Y QFLK RKA+D R E EE G E T WSNGEDIALLNALKA
Sbjct: 250 GEKKIYESDDYAQFLKNRKASDPRLVDENEENSGAGGDAEGTKEIWSNGEDIALLNALKA 309
Query: 324 FPKDAPMRWEKVAVAVPGKSKAACVKRVAELKKGFRSSK 208
FPK+A MRWEK+A AVPGKSKAAC+KRV ELKKGFRSSK
Sbjct: 310 FPKEAAMRWEKIAAAVPGKSKAACMKRVTELKKGFRSSK 348
Score = 55.8 bits (133), Expect = 4e-07
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 12/60 (20%)
Frame = -3
Query: 565 GRWEAIAAAFGGRHKAESVIKKSKELGEKRSDDSDSV------------RAVFEEEEGGG 422
GRWE +A+AFGGR+K E+VIKK+KE+GEK+ +SD R V E EE G
Sbjct: 224 GRWETVASAFGGRYKTENVIKKAKEIGEKKIYESDDYAQFLKNRKASDPRLVDENEENSG 283
Score = 33.1 bits (74), Expect = 2.5
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 402 EEEGKVEEETNWSNGEDIALLNALKAFPKDAPMRWEKVAVAVPGKSKAACVKRVAE 235
+E G V E +W+ E L L P P RWE VA A G+ K V + A+
Sbjct: 192 KESGSVNETKDWTAEEIEILKKQLIKHPAGKPGRWETVASAFGGRYKTENVIKKAK 247
>ref|NP_568645.1| expressed protein; protein id: At5g45420.1, supported by cDNA:
gi_13605892 [Arabidopsis thaliana]
gi|13605893|gb|AAK32932.1|AF367345_1 AT5g45420/MFC19_9
[Arabidopsis thaliana] gi|18491137|gb|AAL69537.1|
AT5g45420/MFC19_9 [Arabidopsis thaliana]
gi|26450023|dbj|BAC42132.1| unknown protein [Arabidopsis
thaliana]
Length = 309
Score = 117 bits (294), Expect = 8e-26
Identities = 66/99 (66%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Frame = -1
Query: 486 GRKEATIRTRYEQFLKKRKAADKRGGGEEEE----GKVEEETN--WSNGEDIALLNALKA 325
G K+ Y QFLK RKA+D R E EE G E T WSNGEDIALLNALKA
Sbjct: 207 GEKKIYESDDYAQFLKNRKASDPRLVDENEENSGAGGDAEGTKEIWSNGEDIALLNALKA 266
Query: 324 FPKDAPMRWEKVAVAVPGKSKAACVKRVAELKKGFRSSK 208
FPK+A MRWEK+A AVPGKSKAAC+KRV ELKKGFRSSK
Sbjct: 267 FPKEAAMRWEKIAAAVPGKSKAACMKRVTELKKGFRSSK 305
Score = 55.8 bits (133), Expect = 4e-07
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 12/60 (20%)
Frame = -3
Query: 565 GRWEAIAAAFGGRHKAESVIKKSKELGEKRSDDSDSV------------RAVFEEEEGGG 422
GRWE +A+AFGGR+K E+VIKK+KE+GEK+ +SD R V E EE G
Sbjct: 181 GRWETVASAFGGRYKTENVIKKAKEIGEKKIYESDDYAQFLKNRKASDPRLVDENEENSG 240
Score = 33.1 bits (74), Expect = 2.5
Identities = 20/56 (35%), Positives = 26/56 (45%)
Frame = -1
Query: 402 EEEGKVEEETNWSNGEDIALLNALKAFPKDAPMRWEKVAVAVPGKSKAACVKRVAE 235
+E G V E +W+ E L L P P RWE VA A G+ K V + A+
Sbjct: 149 KESGSVNETKDWTAEEIEILKKQLIKHPAGKPGRWETVASAFGGRYKTENVIKKAK 204
>ref|NP_187752.1| putative cell division related protein; protein id: At3g11450.1
[Arabidopsis thaliana]
gi|12322899|gb|AAG51437.1|AC008153_10 putative cell
division related protein; 50012-47994 [Arabidopsis
thaliana]
Length = 663
Score = 63.9 bits (154), Expect = 1e-09
Identities = 30/76 (39%), Positives = 45/76 (58%)
Frame = -1
Query: 435 RKAADKRGGGEEEEGKVEEETNWSNGEDIALLNALKAFPKDAPMRWEKVAVAVPGKSKAA 256
+ ++ + E G + +WS ++ AL+ ALK FPK+ RWE+VA AVPGK+
Sbjct: 585 KSSSSQSSDNNGEVGGSSDADSWSTVQERALVQALKTFPKETSQRWERVAAAVPGKTMNQ 644
Query: 255 CVKRVAELKKGFRSSK 208
C K+ AELK+ R+ K
Sbjct: 645 CKKKFAELKEIIRNKK 660
>ref|NP_196229.1| cell division related protein-like; protein id: At5g06110.1
[Arabidopsis thaliana] gi|8978347|dbj|BAA98200.1| cell
division related protein-like [Arabidopsis thaliana]
Length = 663
Score = 63.2 bits (152), Expect = 2e-09
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = -1
Query: 453 EQFLKKRKAADKRGGGEEEEGKVEEETNWSNGEDIALLNALKAFPKDAPMRWEKVAVAVP 274
EQ K ++ + G E + WS ++ AL+ ALK FPK+ RWE+VA AVP
Sbjct: 579 EQNGKTKENNNSNGNSEPAAASGSDPDGWSAVQERALVQALKTFPKETNQRWERVATAVP 638
Query: 273 GKSKAACVKRVAELKKGFRSSK 208
GK+ C K+ A+LK R+ K
Sbjct: 639 GKTMNQCKKKFADLKDVIRTKK 660
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,703,007
Number of Sequences: 1393205
Number of extensions: 12418118
Number of successful extensions: 61548
Number of sequences better than 10.0: 302
Number of HSP's better than 10.0 without gapping: 52347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60391
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
