Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003372A_C01 KMC003372A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201196.1| unknown protein; protein id: At5g63910.1, suppo... 154 8e-37
gb|AAH07029.1|AAH07029 Unknown (protein for IMAGE:3933577) [Homo... 64 1e-09
dbj|BAA74931.1| KIAA0908 protein [Homo sapiens] 64 1e-09
dbj|BAB60740.1| hypothetical protein [Macaca fascicularis] 64 1e-09
ref|NP_057381.1| prenylcysteine lyase [Homo sapiens] gi|12643885... 64 1e-09
>ref|NP_201196.1| unknown protein; protein id: At5g63910.1, supported by cDNA:
gi_19698816 [Arabidopsis thaliana]
gi|12644543|sp|P57681|PCL1_ARATH Putative prenylcysteine
oxidase precursor gi|19698817|gb|AAL91144.1| unknown
protein [Arabidopsis thaliana]
gi|22136076|gb|AAM91116.1| unknown protein [Arabidopsis
thaliana]
Length = 500
Score = 154 bits (389), Expect = 8e-37
Identities = 73/101 (72%), Positives = 86/101 (84%)
Frame = -2
Query: 594 SVLKKHSEKESTYKIFSRQPMXDTLLDSIFSVRTETIRINWGAYPHYHAPEKFAPFILDG 415
S+L+K+S+ + TYKIF+RQP D+LLD +FS RTET+RI+WGAYP YHAPE FAPFILD
Sbjct: 385 SILRKYSKTDMTYKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDD 444
Query: 414 RHLYYVNAFENAASTMETSAVAAENIARLILSRYFSKVQCS 292
HLYYVNAFENAASTMETSAVA ENIARLI+SR+ +K S
Sbjct: 445 HHLYYVNAFENAASTMETSAVAGENIARLIISRFMTKESLS 485
>gb|AAH07029.1|AAH07029 Unknown (protein for IMAGE:3933577) [Homo sapiens]
Length = 386
Score = 64.3 bits (155), Expect = 1e-09
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = -2
Query: 594 SVLKKHSEKEST-----YKIFSRQPMXDTLLDSIFSVRTETIRINWGAYPHYHAPEKFAP 430
SV +K + ST +KIFS++ + + +F ++ W AYPHY PEK
Sbjct: 269 SVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPS 328
Query: 429 FILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRY 313
IL R LYY+N E AAS ME SA+AA N A L R+
Sbjct: 329 IILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 366
>dbj|BAA74931.1| KIAA0908 protein [Homo sapiens]
Length = 506
Score = 64.3 bits (155), Expect = 1e-09
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = -2
Query: 594 SVLKKHSEKEST-----YKIFSRQPMXDTLLDSIFSVRTETIRINWGAYPHYHAPEKFAP 430
SV +K + ST +KIFS++ + + +F ++ W AYPHY PEK
Sbjct: 389 SVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPS 448
Query: 429 FILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRY 313
IL R LYY+N E AAS ME SA+AA N A L R+
Sbjct: 449 IILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 486
>dbj|BAB60740.1| hypothetical protein [Macaca fascicularis]
Length = 505
Score = 64.3 bits (155), Expect = 1e-09
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = -2
Query: 594 SVLKKHSEKEST-----YKIFSRQPMXDTLLDSIFSVRTETIRINWGAYPHYHAPEKFAP 430
SV +K + ST +KIFS++ + + +F ++ W AYPHY PEK
Sbjct: 388 SVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPS 447
Query: 429 FILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRY 313
IL R LYY+N E AAS ME SA+AA N A L R+
Sbjct: 448 IILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485
>ref|NP_057381.1| prenylcysteine lyase [Homo sapiens]
gi|12643885|sp|Q9UHG3|PCL1_HUMAN Prenylcysteine oxidase
precursor gi|6561481|gb|AAF16937.1|AF181490_1
prenylcysteine lyase [Homo sapiens]
Length = 505
Score = 64.3 bits (155), Expect = 1e-09
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = -2
Query: 594 SVLKKHSEKEST-----YKIFSRQPMXDTLLDSIFSVRTETIRINWGAYPHYHAPEKFAP 430
SV +K + ST +KIFS++ + + +F ++ W AYPHY PEK
Sbjct: 388 SVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPS 447
Query: 429 FILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRY 313
IL R LYY+N E AAS ME SA+AA N A L R+
Sbjct: 448 IILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,496,212
Number of Sequences: 1393205
Number of extensions: 9362692
Number of successful extensions: 16680
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16668
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
