Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003367A_C01 KMC003367A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_713816.1| Dihydroorotase [Leptospira interrogans serovar ... 32 3.1
gb|AAD45214.1| NADH dehydrogenase subunit 4 [Marmota menzbieri] 32 5.2
gb|EAA15655.1| chloroquine resistance marker protein [Plasmodium... 32 5.2
ref|NP_659245.1| NADH dehydrogenase subunit 4 [Arctocephalus for... 31 6.9
ref|NP_007352.1|ND5_11617 NADH dehydrogenase subunit 5 [Arbacia ... 31 8.9
>ref|NP_713816.1| Dihydroorotase [Leptospira interrogans serovar lai str. 56601]
gi|24197611|gb|AAN50834.1|AE011519_3 Dihydroorotase
[Leptospira interrogans serovar lai str. 56601]
Length = 424
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = +1
Query: 1 STTQFAYKLVN*YNLKGAICFFQTSEEEKRKEKRKHLFLVL*CNVTKT 144
+ T FA L+ YNL+G +C + T E + + K + + C VT T
Sbjct: 210 TATDFALYLIEKYNLRGKLCHYSTGEGLNKIKFAKQKGVKVTCEVTPT 257
>gb|AAD45214.1| NADH dehydrogenase subunit 4 [Marmota menzbieri]
Length = 408
Score = 31.6 bits (70), Expect = 5.2
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = -3
Query: 385 NAG*TFLFNTLIGEFHLNSA-----KNRKSLNFVVRPT*NS--PNNWCGIKSVVNLSLWL 227
NAG FLF TL+G HL A K+ SLNF++ +S P +W N LWL
Sbjct: 130 NAGLYFLFYTLVGSLHLLVALIYIQKSTGSLNFIISTYQSSVLPMSW------TNHILWL 183
>gb|EAA15655.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 2366
Score = 31.6 bits (70), Expect = 5.2
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 12/69 (17%)
Frame = +2
Query: 83 KKEKKNASIFSLFFNVM*PKQQFSGY*LQGQSILK------------VTLTNNYNGHLTN 226
K +KKN SI S+ N+ ++ F G+ +S LK V L N+YNG + N
Sbjct: 1802 KSKKKNNSINSIIINLSKVQKSFKGFSQINESHLKDFYSYYIFFKFLVKLQNSYNGIIEN 1861
Query: 227 *PKRKVNNT 253
++NNT
Sbjct: 1862 -NTNEINNT 1869
>ref|NP_659245.1| NADH dehydrogenase subunit 4 [Arctocephalus forsteri]
gi|21397137|gb|AAM51816.1|AF513820_9 NADH dehydrogenase
subunit 4 [Arctocephalus forsteri]
Length = 459
Score = 31.2 bits (69), Expect = 6.9
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -3
Query: 385 NAG*TFLFNTLIGEFHLNSA-----KNRKSLNFVVRP--T*NSPNNWCGIKSVVNLSLWL 227
NAG FLF TL+G L A N +LNF+V T PN+W N+ LWL
Sbjct: 144 NAGLYFLFYTLVGSLPLLVALLYMQNNMGTLNFLVAQYWTQTLPNSWS------NILLWL 197
Query: 226 ISEVSVII 203
++ ++
Sbjct: 198 ACMMAFMV 205
>ref|NP_007352.1|ND5_11617 NADH dehydrogenase subunit 5 [Arbacia lixula]
gi|7432501|pir||T11801 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - sea urchin (Arbacia lixula)
mitochondrion gi|1480396|emb|CAA56605.1| NADH
dehydrogenase subunit 5 [Arbacia lixula]
Length = 638
Score = 30.8 bits (68), Expect = 8.9
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -3
Query: 247 VNLSLWL---ISEVSVIIIGQSNFQYTLPLELV-S*ELLFWSHYIKEQGKDACVFLFFFL 80
V S+WL + VS+ I+ F L + LV + ++ +SHY E+ + VF FL
Sbjct: 95 VTFSIWLSNTAANVSLSILFDHYFIVFLTVALVVTWSIMEFSHYYMEEDPNKNVF---FL 151
Query: 79 LLKFGKNKWHLLSCTNSLIYM 17
LL +L+C+NSL +
Sbjct: 152 LLTIFLLNMLILTCSNSLFLL 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,325,059
Number of Sequences: 1393205
Number of extensions: 7862568
Number of successful extensions: 17602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17584
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
