Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003366A_C01 KMC003366A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca] 148 5e-35
emb|CAD39516.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar... 140 1e-32
ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 135 3e-31
ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxid... 134 6e-31
ref|NP_172149.1| oxidoreductase, putative; protein id: At1g06640... 134 6e-31
>gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca]
Length = 370
Score = 148 bits (373), Expect = 5e-35
Identities = 68/99 (68%), Positives = 84/99 (84%)
Frame = -2
Query: 575 QVLYQNQWVDVKPVDGALVINLGDILQLISNDKFKSARHRVLANKVGPRISVACFFSTHF 396
QVL+QN W+DV PV GALV+N+GD+LQLISND+F+S HRVLAN+ PR+SVACFFST F
Sbjct: 261 QVLHQNTWIDVLPVPGALVVNIGDLLQLISNDRFRSVEHRVLANRACPRVSVACFFSTGF 320
Query: 395 QPCNRVYGPIKELLSEENPPLYKETTVRDYVAHYHSKGL 279
R+YGPIKELLSE+N P Y+ETTV+DY AH+++KGL
Sbjct: 321 LALPRIYGPIKELLSEDNLPKYRETTVKDYNAHHYNKGL 359
>emb|CAD39516.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
Length = 375
Score = 140 bits (352), Expect = 1e-32
Identities = 62/100 (62%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Frame = -2
Query: 575 QVLYQNQWVDVKPVDGALVINLGDILQLISNDKFKSARHRVLANKVGPRISVACFFSTHF 396
Q+L++++WVDV P GA ++N+ D+LQLISND +KS HRV+A PR+S+ACFFSTHF
Sbjct: 263 QILHEDRWVDVTPTPGAFIVNVADLLQLISNDNYKSVEHRVVAKNTEPRVSIACFFSTHF 322
Query: 395 QPCN-RVYGPIKELLSEENPPLYKETTVRDYVAHYHSKGL 279
P + R+YGPIKELLS+ENPPLY+E VRDY A Y+S GL
Sbjct: 323 HPISTRMYGPIKELLSDENPPLYREALVRDYTARYYSVGL 362
>ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59540.1, supported by cDNA: gi_15983482
[Arabidopsis thaliana] gi|8885558|dbj|BAA97488.1|
leucoanthocyanidin dioxygenase-like protein [Arabidopsis
thaliana] gi|15983483|gb|AAL11609.1|AF424616_1
AT5g59540/f2o15_200 [Arabidopsis thaliana]
Length = 366
Score = 135 bits (341), Expect = 3e-31
Identities = 61/99 (61%), Positives = 80/99 (80%)
Frame = -2
Query: 575 QVLYQNQWVDVKPVDGALVINLGDILQLISNDKFKSARHRVLANKVGPRISVACFFSTHF 396
Q+L+Q+ WVDV P+ GALV+N+GD LQLI+NDKF S HRVLAN+ GPRISVA FFS+
Sbjct: 257 QILHQDSWVDVSPIHGALVVNIGDFLQLITNDKFVSVEHRVLANRQGPRISVASFFSSSM 316
Query: 395 QPCNRVYGPIKELLSEENPPLYKETTVRDYVAHYHSKGL 279
+P +RVYGP+KEL+SEENPP Y++ T+++Y + KGL
Sbjct: 317 RPNSRVYGPMKELVSEENPPKYRDITIKEYSKIFFEKGL 355
>ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxidase; protein id:
At1g04380.1 [Arabidopsis thaliana]
gi|25285694|pir||E86175 hypothetical protein [imported]
- Arabidopsis thaliana gi|1903357|gb|AAB70438.1| Strong
similarity to Arabidopsis 2A6 (gb|X83096). [Arabidopsis
thaliana]
Length = 345
Score = 134 bits (338), Expect = 6e-31
Identities = 62/99 (62%), Positives = 78/99 (78%)
Frame = -2
Query: 575 QVLYQNQWVDVKPVDGALVINLGDILQLISNDKFKSARHRVLANKVGPRISVACFFSTHF 396
Q+L+Q+ WVDV P+ GAL+IN+GD LQL++NDKF S HRVL N+VGPRIS+ACFFS+
Sbjct: 236 QILHQDCWVDVSPLPGALIINIGDFLQLMTNDKFISVDHRVLTNRVGPRISIACFFSSSM 295
Query: 395 QPCNRVYGPIKELLSEENPPLYKETTVRDYVAHYHSKGL 279
P + VYGPIKELLSEENPP Y++ T+ +Y Y KGL
Sbjct: 296 NPNSTVYGPIKELLSEENPPKYRDFTIPEYSKGYIEKGL 334
>ref|NP_172149.1| oxidoreductase, putative; protein id: At1g06640.1, supported by
cDNA: gi_13430545 [Arabidopsis thaliana]
gi|13430546|gb|AAK25895.1|AF360185_1 putative
oxidoreductase [Arabidopsis thaliana]
gi|14532752|gb|AAK64077.1| putative oxidoreductase
[Arabidopsis thaliana]
Length = 369
Score = 134 bits (338), Expect = 6e-31
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = -2
Query: 575 QVLYQNQWVDVKPVDGALVINLGDILQLISNDKFKSARHRVLANKVG-PRISVACFFSTH 399
QV + W DV V GAL+IN+GD+LQLI+NDKF S +HRVLAN+ R+SVACFF TH
Sbjct: 259 QVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTH 318
Query: 398 FQPCNRVYGPIKELLSEENPPLYKETTVRDYVAHYHSKGLATSTPPLEDFR 246
+P RVYGPIKEL+SEENPP Y+ETT+RDY +++ KGL T L DF+
Sbjct: 319 VKPNPRVYGPIKELVSEENPPKYRETTIRDYATYFNGKGLG-GTSALLDFK 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,871,561
Number of Sequences: 1393205
Number of extensions: 9973210
Number of successful extensions: 22473
Number of sequences better than 10.0: 610
Number of HSP's better than 10.0 without gapping: 21604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22332
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
