Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003356A_C01 KMC003356A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62410.1|AF480488_1 NPR1 [Nicotiana tabacum] 52 1e-06
dbj|BAB12719.1| putative regulatory protein NPR1 [Oryza sativa (... 47 1e-04
dbj|BAC10768.1| putative Regulatory protein NPR1 (Nonexpresser o... 45 3e-04
ref|NP_194342.1| NPR1 like protein; protein id: At4g26120.1 [Ara... 41 0.005
gb|AAM98084.1| AT5g45110/K17O22_11 [Arabidopsis thaliana] gi|284... 41 0.005
>gb|AAM62410.1|AF480488_1 NPR1 [Nicotiana tabacum]
Length = 588
Score = 51.6 bits (122), Expect(2) = 1e-06
Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 12/71 (16%)
Frame = -1
Query: 340 TQGYSVLHVAAMKGEPQIIVSLLTNG------------LFWMVEKQFMFKSINKSTEEGE 197
++GY+VLHVAAM+ EP+I+VSLLT G + ++ +KS EEG+
Sbjct: 326 SRGYTVLHVAAMRKEPKIVVSLLTKGARPSDLTSDGRKALQIAKRLTRLVDFSKSPEEGK 385
Query: 196 VSSKDR*CIDI 164
+S DR CI+I
Sbjct: 386 SASNDRLCIEI 396
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 122 VSPAMAGDDFRINFV 78
VS AMAGDD R+ +
Sbjct: 412 VSLAMAGDDLRMKLL 426
>dbj|BAB12719.1| putative regulatory protein NPR1 [Oryza sativa (japonica
cultivar-group)] gi|10934082|dbj|BAB16860.1| Arabidopsis
thaliana regulatory protein NPR1 like protein [Oryza
sativa (japonica cultivar-group)]
Length = 582
Score = 46.6 bits (109), Expect = 1e-04
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Frame = -1
Query: 337 QGYSVLHVAAMKGEPQIIVSLLTNG------LFWMVEKQFMFKSINKS------TEEGEV 194
+GY+VLH+AA + EP+IIVSLLT G F + + K + K TEEG+
Sbjct: 332 RGYTVLHIAARRREPKIIVSLLTKGARPADVTFDGRKAVQISKRLTKQGDYFGVTEEGKP 391
Query: 193 SSKDR*CIDI 164
S KDR CI+I
Sbjct: 392 SPKDRLCIEI 401
>dbj|BAC10768.1| putative Regulatory protein NPR1 (Nonexpresser of PR genes 1)
[Oryza sativa (japonica cultivar-group)]
Length = 635
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/71 (36%), Positives = 37/71 (51%), Gaps = 12/71 (16%)
Frame = -1
Query: 340 TQGYSVLHVAAMKGEPQIIVSLLTNG------------LFWMVEKQFMFKSINKSTEEGE 197
++GY+ LH+AAM+ EP II+ LL G + + K N E+G+
Sbjct: 379 SRGYTALHLAAMRREPAIIMCLLNKGAAVSQLTADGQSAMSICRRLTRMKDYNTKMEQGQ 438
Query: 196 VSSKDR*CIDI 164
S+KDR CIDI
Sbjct: 439 ESNKDRLCIDI 449
>ref|NP_194342.1| NPR1 like protein; protein id: At4g26120.1 [Arabidopsis thaliana]
gi|7487977|pir||T04267 NPR1 protein homolog F20B18.230 -
Arabidopsis thaliana gi|4538941|emb|CAB39677.1| NPR1
like protein [Arabidopsis thaliana]
gi|7269463|emb|CAB79467.1| NPR1 like protein
[Arabidopsis thaliana]
Length = 600
Score = 41.2 bits (95), Expect = 0.005
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = -1
Query: 337 QGYSVLHVAAMKGEPQIIVSLLTNG------------LFWMVEKQFMFKSINKSTEEGEV 194
+GY+VLHVAAM+ EP++I+SLL G +V++ STE+G
Sbjct: 327 RGYTVLHVAAMRKEPKLIISLLMKGANILDTTLDGRTALVIVKRLTKADDYKTSTEDGTP 386
Query: 193 SSKDR*CIDI 164
S K CI++
Sbjct: 387 SLKGGLCIEV 396
>gb|AAM98084.1| AT5g45110/K17O22_11 [Arabidopsis thaliana]
gi|28416505|gb|AAO42783.1| AT5g45110/K17O22_11
[Arabidopsis thaliana]
Length = 586
Score = 41.2 bits (95), Expect = 0.005
Identities = 26/71 (36%), Positives = 37/71 (51%), Gaps = 12/71 (16%)
Frame = -1
Query: 340 TQGYSVLHVAAMKGEPQIIVSLLTNG------------LFWMVEKQFMFKSINKSTEEGE 197
++GY+VLH AAM+ EP II+SL+ G ++ + K + T +G
Sbjct: 323 SRGYTVLHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLTNPKDYHTKTAKGR 382
Query: 196 VSSKDR*CIDI 164
SSK R CIDI
Sbjct: 383 ESSKARLCIDI 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,017,375
Number of Sequences: 1393205
Number of extensions: 7139289
Number of successful extensions: 17822
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17817
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
