Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003355A_C01 KMC003355A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199219.1| putative protein; protein id: At5g44060.1 [Arab... 74 1e-12
ref|NP_563697.1| expressed protein; protein id: At1g04000.1, sup... 72 4e-12
gb|AAM67169.1| unknown [Arabidopsis thaliana] 72 4e-12
ref|NP_188986.1| hypothetical protein; protein id: At3g23440.1 [... 57 2e-07
gb|AAG16859.1|AC069145_8 hypothetical protein [Oryza sativa] 50 2e-05
>ref|NP_199219.1| putative protein; protein id: At5g44060.1 [Arabidopsis thaliana]
gi|9758565|dbj|BAB09066.1|
gb|AAD10670.1~gene_id:MRH10.17~similar to unknown
protein [Arabidopsis thaliana]
gi|26451331|dbj|BAC42766.1| unknown protein [Arabidopsis
thaliana] gi|28973277|gb|AAO63963.1| unknown protein
[Arabidopsis thaliana]
Length = 150
Score = 74.3 bits (181), Expect = 1e-12
Identities = 41/81 (50%), Positives = 53/81 (64%), Gaps = 5/81 (6%)
Frame = -3
Query: 616 LAHEYLTKGTLLGQPWVPAKTD-GP--TKAEDGEEGRKAAAAE--EEERERYAEVAGLLR 452
LAHE+L GTL G+ W P K GP T++ D + + + E + +R RY EVA +LR
Sbjct: 70 LAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILR 129
Query: 451 GGGTHLPGLVNPTQLARFLHL 389
GTHLPG+VNP+QLARFL L
Sbjct: 130 VDGTHLPGIVNPSQLARFLKL 150
>ref|NP_563697.1| expressed protein; protein id: At1g04000.1, supported by cDNA:
9756. [Arabidopsis thaliana] gi|25373356|pir||B86171
hypothetical protein [imported] - Arabidopsis thaliana
gi|4204289|gb|AAD10670.1| Unknown protein [Arabidopsis
thaliana] gi|28393054|gb|AAO41961.1| unknown protein
[Arabidopsis thaliana] gi|28827338|gb|AAO50513.1|
unknown protein [Arabidopsis thaliana]
Length = 152
Score = 72.4 bits (176), Expect = 4e-12
Identities = 37/76 (48%), Positives = 46/76 (59%)
Frame = -3
Query: 616 LAHEYLTKGTLLGQPWVPAKTDGPTKAEDGEEGRKAAAAEEEERERYAEVAGLLRGGGTH 437
L+HEYLT+GTL G+ W A+ + + A E +R+RY EVA LLR G
Sbjct: 77 LSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEPKRKRYREVANLLRSDGAQ 136
Query: 436 LPGLVNPTQLARFLHL 389
LPG+VNP QLARFL L
Sbjct: 137 LPGIVNPAQLARFLKL 152
>gb|AAM67169.1| unknown [Arabidopsis thaliana]
Length = 147
Score = 72.4 bits (176), Expect = 4e-12
Identities = 37/76 (48%), Positives = 46/76 (59%)
Frame = -3
Query: 616 LAHEYLTKGTLLGQPWVPAKTDGPTKAEDGEEGRKAAAAEEEERERYAEVAGLLRGGGTH 437
L+HEYLT+GTL G+ W A+ + + A E +R+RY EVA LLR G
Sbjct: 72 LSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEPKRKRYREVANLLRSDGAQ 131
Query: 436 LPGLVNPTQLARFLHL 389
LPG+VNP QLARFL L
Sbjct: 132 LPGIVNPAQLARFLKL 147
>ref|NP_188986.1| hypothetical protein; protein id: At3g23440.1 [Arabidopsis
thaliana] gi|11994329|dbj|BAB02288.1|
gene_id:MLM24.17~unknown protein [Arabidopsis thaliana]
Length = 108
Score = 57.0 bits (136), Expect = 2e-07
Identities = 30/77 (38%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Frame = -3
Query: 616 LAHEYLTKGTLLGQPWVPAKTD-GPTKAEDGEEGRKAAAAEEEERERYAEVAGLLRGGGT 440
+AHEYLT GT+LG+ + GP + + R+ A R+ Y+EVA + + G
Sbjct: 36 MAHEYLTCGTMLGRKLYSGWAEVGPLVSPSPLQSREVKKA----RQSYSEVASVFKTDGN 91
Query: 439 HLPGLVNPTQLARFLHL 389
H+PG+VNPTQLA+++ +
Sbjct: 92 HVPGVVNPTQLAKWIQM 108
>gb|AAG16859.1|AC069145_8 hypothetical protein [Oryza sativa]
Length = 120
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/74 (40%), Positives = 40/74 (53%)
Frame = -3
Query: 616 LAHEYLTKGTLLGQPWVPAKTDGPTKAEDGEEGRKAAAAEEEERERYAEVAGLLRGGGTH 437
LAHE+LT GT+LG+ + T E+G GR Y VA L+ GGG
Sbjct: 62 LAHEFLTAGTVLGE-----RLAAGTTPEEGGGGR------------YEAVAALVHGGGAR 104
Query: 436 LPGLVNPTQLARFL 395
+PG+VNP QLA ++
Sbjct: 105 VPGVVNPAQLAAWV 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 670,421,699
Number of Sequences: 1393205
Number of extensions: 20724213
Number of successful extensions: 419029
Number of sequences better than 10.0: 5082
Number of HSP's better than 10.0 without gapping: 125738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274584
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
