Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003354A_C01 KMC003354A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_073764.1| NADH dehydrogenase subunit 2 [Heterodoxus macro... 35 0.51
gb|AAL38658.1| hypothetical protein [Haemophilus influenzae] 34 0.67
ref|NP_687678.1| membrane protein, putative [Streptococcus agala... 33 1.5
ref|NP_735093.1| Unknown [Streptococcus agalactiae NEM316] gi|23... 33 1.5
ref|XP_126625.2| ATP-binding cassette, sub-family A (ABC1), memb... 33 2.0
>ref|NP_073764.1| NADH dehydrogenase subunit 2 [Heterodoxus macropus]
gi|12328595|gb|AAG52652.1|AF270939_8 NADH dehydrogenase
subunit 2 [Heterodoxus macropus]
Length = 298
Score = 34.7 bits (78), Expect = 0.51
Identities = 28/110 (25%), Positives = 51/110 (45%), Gaps = 7/110 (6%)
Frame = -3
Query: 314 FKVVLCILAVF*FIRWLLRVIQGARQLSHIFFGY*YLIYWSLVALGC*LSILL*C*H*AR 135
F ++ + ++ F W +++ +S FF + +LV + S + ++
Sbjct: 81 FLLLTMKIGIYPFHWWFFNLVENLNWMSFFFFNSIVKLVPTLVFIFLMKSEI------SK 134
Query: 134 TLVFHLLFLVSFRGQSLPL----LLVSFSSLCILGWAPLCSL---NIFLW 6
L+F LL +S SLPL +++SFSS+ W LCS+ + F W
Sbjct: 135 ILIFFLLVSMSLSMFSLPLKSLRMILSFSSMIHFSWIILCSILSVSYFQW 184
>gb|AAL38658.1| hypothetical protein [Haemophilus influenzae]
Length = 134
Score = 34.3 bits (77), Expect = 0.67
Identities = 32/104 (30%), Positives = 49/104 (46%), Gaps = 1/104 (0%)
Frame = -2
Query: 363 DLKSSRVPPGSVKGFSIQGCAMYFGSFLVYSVAAESYTRSQAIKSHLFWVLVSYLLVFSS 184
+LK S +P +Q M F FL Y +Y S+L + VS +FS+
Sbjct: 45 NLKMSAIP-------YMQRAIMLFILFLFYKRIPYTY-------SNLLLLYVSLFFIFSN 90
Query: 183 FGVLAFYTSVMLALS*DLSFSFVVSSL-F*RTVFTSFISLFFLS 55
GVLA S +L +S + FS ++ +L F R + +FFL+
Sbjct: 91 VGVLANRVSGILLVSYAIFFSVLICNLKFKRNRLLIILYMFFLT 134
>ref|NP_687678.1| membrane protein, putative [Streptococcus agalactiae 2603V/R]
gi|22533674|gb|AAM99550.1|AE014221_5 membrane protein,
putative [Streptococcus agalactiae 2603V/R]
Length = 272
Score = 33.1 bits (74), Expect = 1.5
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 231 SHLFWVLVSYLLVFSSFGV--LAFYTSVMLALS*DLSFSFVVSSLF*RTVFTSFISLFFL 58
S+LF + S L+F S GV L T V L L DL + V+ + ++ +F+ FF
Sbjct: 108 SYLFMEIGSRWLIFLSIGVPFLLVITGVRLFLGTDLIQAIVLVVFYIISIILAFLINFFF 167
Query: 57 SLYFGLGTLV 28
++ FG V
Sbjct: 168 NICFGFSAFV 177
>ref|NP_735093.1| Unknown [Streptococcus agalactiae NEM316]
gi|23095052|emb|CAD46286.1| Unknown [Streptococcus
agalactiae NEM316]
Length = 272
Score = 33.1 bits (74), Expect = 1.5
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 231 SHLFWVLVSYLLVFSSFGV--LAFYTSVMLALS*DLSFSFVVSSLF*RTVFTSFISLFFL 58
S+LF + S L+F S GV L T V L L DL + V+ + ++ +F+ FF
Sbjct: 108 SYLFMEIGSRWLIFLSIGVPFLLVITGVRLFLGTDLIQAIVLVVFYIISIILAFLINFFF 167
Query: 57 SLYFGLGTLV 28
++ FG V
Sbjct: 168 NICFGFSAFV 177
>ref|XP_126625.2| ATP-binding cassette, sub-family A (ABC1), member 8b [Mus musculus]
Length = 1620
Score = 32.7 bits (73), Expect = 2.0
Identities = 22/65 (33%), Positives = 40/65 (60%)
Frame = -2
Query: 237 IKSHLFWVLVSYLLVFSSFGVLAFYTSVMLALS*DLSFSFVVSSLF*RTVFTSFISLFFL 58
IKS F++L S+++VFS F Y M+ L +F++S+L ++V T +S+F L
Sbjct: 287 IKSVQFFILTSFMVVFSLF---LLYGLSMITL------AFLMSALVRKSVLTG-LSVFLL 336
Query: 57 SLYFG 43
++++G
Sbjct: 337 TIFWG 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,321,494
Number of Sequences: 1393205
Number of extensions: 6847818
Number of successful extensions: 17000
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16997
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
