Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003353A_C01 KMC003353A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179865.1| homeobox-leucine zipper protein HAT9 (HD-Zip pr... 149 2e-35
pir||T52372 homeobox protein HAT9 [imported] - Arabidopsis thali... 149 2e-35
pir||T52371 homeobox protein HAT9 [imported] - Arabidopsis thali... 149 2e-35
ref|NP_195493.1| homeobox protein HAT22; protein id: At4g37790.1... 148 4e-35
pir||T12616 homeobox protein - common sunflower gi|1032372|gb|AA... 119 2e-26
>ref|NP_179865.1| homeobox-leucine zipper protein HAT9 (HD-Zip protein 9); protein
id: At2g22800.1, supported by cDNA: gi_527638
[Arabidopsis thaliana] gi|21264431|sp|P46603|HAT9_ARATH
Homeobox-leucine zipper protein HAT9
(Homeodomain-leucine zipper protein HAT9) (Homeodomain
transcription factor HAT9) (HD-ZIP protein 9)
gi|25386219|pir||A84617 homeodomain transcription factor
(HAT9) [imported] - Arabidopsis thaliana
gi|3445197|gb|AAC32427.1| homeodomain transcription
factor (HAT9) [Arabidopsis thaliana]
gi|20197409|gb|AAM15064.1| homeodomain transcription
factor (HAT9) [Arabidopsis thaliana]
Length = 274
Score = 149 bits (376), Expect = 2e-35
Identities = 75/111 (67%), Positives = 84/111 (75%), Gaps = 17/111 (15%)
Frame = -1
Query: 331 RTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALK-TQPLYMPMPAATLTMCPSCE 155
RTKLKQTEVDC+FLKKCCETL DEN+RLQKE+QELK LK TQP YM MPA+TLT CPSCE
Sbjct: 164 RTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCE 223
Query: 154 RLGGVSGG----------------GASNKIPFSMASKPHFFNPFTNPSAAC 50
R+GG GG G++ K FS++SKPHFFNPFTNPSAAC
Sbjct: 224 RIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274
>pir||T52372 homeobox protein HAT9 [imported] - Arabidopsis thaliana
gi|549893|gb|AAA56908.1| homeobox protein
Length = 274
Score = 149 bits (376), Expect = 2e-35
Identities = 75/111 (67%), Positives = 84/111 (75%), Gaps = 17/111 (15%)
Frame = -1
Query: 331 RTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALK-TQPLYMPMPAATLTMCPSCE 155
RTKLKQTEVDC+FLKKCCETL DEN+RLQKE+QELK LK TQP YM MPA+TLT CPSCE
Sbjct: 164 RTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCE 223
Query: 154 RLGGVSGG----------------GASNKIPFSMASKPHFFNPFTNPSAAC 50
R+GG GG G++ K FS++SKPHFFNPFTNPSAAC
Sbjct: 224 RIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274
>pir||T52371 homeobox protein HAT9 [imported] - Arabidopsis thaliana
gi|549892|gb|AAA56907.1| homeobox protein
gi|20145865|emb|CAD29652.1| homeodomain-leucine zipper
protein HAT9 [Arabidopsis thaliana]
Length = 274
Score = 149 bits (376), Expect = 2e-35
Identities = 75/111 (67%), Positives = 84/111 (75%), Gaps = 17/111 (15%)
Frame = -1
Query: 331 RTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALK-TQPLYMPMPAATLTMCPSCE 155
RTKLKQTEVDC+FLKKCCETL DEN+RLQKE+QELK LK TQP YM MPA+TLT CPSCE
Sbjct: 164 RTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCE 223
Query: 154 RLGGVSGG----------------GASNKIPFSMASKPHFFNPFTNPSAAC 50
R+GG GG G++ K FS++SKPHFFNPFTNPSAAC
Sbjct: 224 RIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274
>ref|NP_195493.1| homeobox protein HAT22; protein id: At4g37790.1, supported by cDNA:
36691., supported by cDNA: gi_527628 [Arabidopsis
thaliana] gi|1170409|sp|P46604|HT22_ARATH
Homeobox-leucine zipper protein HAT22 (HD-ZIP protein
22) gi|7485008|pir||T06026 homeobox protein HAT22
[imported] - Arabidopsis thaliana
gi|549887|gb|AAA56902.1| homeobox protein
gi|549888|gb|AAA56903.1| homeobox protein
gi|4490724|emb|CAB38927.1| homeobox protein HAT22
[Arabidopsis thaliana] gi|7270762|emb|CAB80444.1|
homeobox protein HAT22 [Arabidopsis thaliana]
gi|20145867|emb|CAD29653.1| homeodomain-leucine zipper
protein HAT22 [Arabidopsis thaliana]
gi|21593156|gb|AAM65105.1| homeobox protein HAT22
[Arabidopsis thaliana] gi|26983798|gb|AAN86151.1|
putative homeobox protein HAT22 [Arabidopsis thaliana]
Length = 278
Score = 148 bits (374), Expect = 4e-35
Identities = 74/102 (72%), Positives = 82/102 (79%), Gaps = 8/102 (7%)
Frame = -1
Query: 331 RTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALK-TQPLYMPMPAATLTMCPSCE 155
RTKLKQTEVDC+FLKKCCETLTDEN RLQKELQ+LKALK +QP YM MPAATLTMCPSCE
Sbjct: 177 RTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCE 236
Query: 154 RLGGVSGGGASNKI-------PFSMASKPHFFNPFTNPSAAC 50
RLGG GG + + FS+ +KP F+NPFTNPSAAC
Sbjct: 237 RLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278
>pir||T12616 homeobox protein - common sunflower gi|1032372|gb|AAA79778.1|
homeodomain protein
Length = 236
Score = 119 bits (298), Expect = 2e-26
Identities = 57/95 (60%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = -1
Query: 331 RTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALKTQP-LYMPMPAATLTMCPSCE 155
RTKLKQTEVDC++LK+CC TLTDEN RL++E+QELKA K P LYM +P TLT+CPSCE
Sbjct: 146 RTKLKQTEVDCEYLKRCCNTLTDENQRLRQEVQELKAQKVSPALYMQLPTTTLTVCPSCE 205
Query: 154 RLGGVSGGGASNKIPFSMASKPHFFNPFTNPSAAC 50
++G + N KP FFNPFT+ SAAC
Sbjct: 206 QIGDTKSATSKN----PCTKKPSFFNPFTSSSAAC 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,080,601
Number of Sequences: 1393205
Number of extensions: 9121958
Number of successful extensions: 35336
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 32870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35158
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
