Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003352A_C01 KMC003352A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis t... 245 2e-64
ref|NP_566441.1| expressed protein; protein id: At3g12990.1, sup... 245 2e-64
ref|NP_191609.1| nucleolar autoantigen - like protein; protein i... 244 3e-64
ref|NP_062266.1| polymyositis/scleroderma autoantigen 1 [Mus mus... 163 1e-39
dbj|BAB27749.1| unnamed protein product [Mus musculus] 163 1e-39
>gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 245 bits (625), Expect = 2e-64
Identities = 116/164 (70%), Positives = 141/164 (85%)
Frame = +2
Query: 23 LRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALASLSTFRRPECSLGG 202
LRESRAVDTESLCVL+G+LVW+VRID+HILDN GNLVDAANVAALA+L TFRRP+C++GG
Sbjct: 115 LRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG 174
Query: 203 EDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVN 382
++ Q V++HPPE R+PLPLIIHHLPIA TFGFF+ +++MDPTY EE+VM GRMT TVN
Sbjct: 175 DNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVN 234
Query: 383 ANGDVCAIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVE 514
ANGD+CAIQK G +GV Q +I+HCLRLA +A T I++AVE
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVE 278
>ref|NP_566441.1| expressed protein; protein id: At3g12990.1, supported by cDNA:
104182. [Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like
protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis
thaliana]
Length = 307
Score = 245 bits (625), Expect = 2e-64
Identities = 116/164 (70%), Positives = 141/164 (85%)
Frame = +2
Query: 23 LRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALASLSTFRRPECSLGG 202
LRESRAVDTESLCVL+G+LVW+VRID+HILDN GNLVDAANVAALA+L TFRRP+C++GG
Sbjct: 115 LRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG 174
Query: 203 EDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVN 382
++ Q V++HPPE R+PLPLIIHHLPIA TFGFF+ +++MDPTY EE+VM GRMT TVN
Sbjct: 175 DNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVN 234
Query: 383 ANGDVCAIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVE 514
ANGD+CAIQK G +GV Q +I+HCLRLA +A T I++AVE
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVE 278
>ref|NP_191609.1| nucleolar autoantigen - like protein; protein id: At3g60500.1
[Arabidopsis thaliana] gi|11358590|pir||T47861 nucleolar
autoantigen-like protein - Arabidopsis thaliana
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like
protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar
autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar
autoantigen protein [Arabidopsis thaliana]
Length = 438
Score = 244 bits (624), Expect = 3e-64
Identities = 116/164 (70%), Positives = 141/164 (85%)
Frame = +2
Query: 23 LRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALASLSTFRRPECSLGG 202
LRESRAVDTESLCVL+G++VW+VRID+HILDN GNLVDAAN+AALA+L TFRRP+C++GG
Sbjct: 115 LRESRAVDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGG 174
Query: 203 EDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVN 382
E+GQ+V++HP E R+PLPLIIHHLPIA TFGFF+ +V+MDPTY EE+VM GRMT TVN
Sbjct: 175 ENGQEVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVN 234
Query: 383 ANGDVCAIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVE 514
ANGD+CAIQK G +GV Q +I+HCLRLA +A T I+E VE
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVE 278
>ref|NP_062266.1| polymyositis/scleroderma autoantigen 1 [Mus musculus]
gi|14285679|sp|Q9JHI7|RR45_MOUSE Exosome complex
exonuclease RRP45 (Polymyositis/scleroderma autoantigen
1) (Autoantigen PM/Scl 1) (Polymyositis/scleroderma
autoantigen 75 kDa) (PM/Scl-75) (P75
polymyositis-scleroderma overlap syndrome associated
autoantigen) gi|8132103|gb|AAF73218.1|AF152841_1
polymyositis scleroderma overlap syndrome (PM-SCL)
antigen 1 a [Mus musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis
scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus] gi|13542847|gb|AAH05622.1|
polymyositis/scleroderma autoantigen 1 [Mus musculus]
Length = 438
Score = 163 bits (412), Expect = 1e-39
Identities = 73/165 (44%), Positives = 117/165 (70%)
Frame = +2
Query: 20 CLRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALASLSTFRRPECSLG 199
CLR S+ +DTESLCV++G+ VW +R+D+H+L++ GN++DAA++AA+ +L FRRP+ S+
Sbjct: 109 CLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQ 168
Query: 200 GEDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATV 379
GE+ V ++ PE RDP+PL IHH+PI V+F FF +++DP +EE VM G + +
Sbjct: 169 GEE---VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM 225
Query: 380 NANGDVCAIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVE 514
N + ++C IQ +GG +L+ + C ++A VK +IT I++A+E
Sbjct: 226 NKHREICTIQSSGGIMLLKDQVFRCSKIAGVKVAEITELIQKALE 270
>dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 163 bits (412), Expect = 1e-39
Identities = 73/165 (44%), Positives = 117/165 (70%)
Frame = +2
Query: 20 CLRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALASLSTFRRPECSLG 199
CLR S+ +DTESLCV++G+ VW +R+D+H+L++ GN++DAA++AA+ +L FRRP+ S+
Sbjct: 109 CLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQ 168
Query: 200 GEDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATV 379
GE+ V ++ PE RDP+PL IHH+PI V+F FF +++DP +EE VM G + +
Sbjct: 169 GEE---VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM 225
Query: 380 NANGDVCAIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVE 514
N + ++C IQ +GG +L+ + C ++A VK +IT I++A+E
Sbjct: 226 NKHREICTIQSSGGIMLLKDQVFRCSKIAGVKVAEITELIQKALE 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,083,664
Number of Sequences: 1393205
Number of extensions: 9996113
Number of successful extensions: 31191
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 29479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30966
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
