Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003344A_C01 KMC003344A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178216.1| transfactor-like protein; protein id: At2g01060... 38 0.079
gb|EAA42825.1| GLP_574_57226_57648 [Giardia lamblia ATCC 50803] 37 0.13
gb|AAM78548.1|AF520617_1 cyclin E [Caenorhabditis briggsae] 37 0.18
ref|NP_011537.1| Mid-Two Like 1; Mtl1p [Saccharomyces cerevisiae... 37 0.18
ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain cont... 37 0.23
>ref|NP_178216.1| transfactor-like protein; protein id: At2g01060.1, supported by
cDNA: gi_13899110 [Arabidopsis thaliana]
gi|25410874|pir||B84420 transfactor-like protein
[imported] - Arabidopsis thaliana
gi|6598621|gb|AAF18654.1| transfactor-like protein
[Arabidopsis thaliana]
gi|13899111|gb|AAK48977.1|AF370550_1 transfactor-like
protein [Arabidopsis thaliana]
gi|21536958|gb|AAM61299.1| transfactor-like protein
[Arabidopsis thaliana] gi|23197610|gb|AAN15332.1|
transfactor-like protein [Arabidopsis thaliana]
Length = 286
Score = 38.1 bits (87), Expect = 0.079
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Frame = -1
Query: 573 MRIEAQGQYLQKIIEEQPTLGSTLTVSEMLPLSHDKQNHPQSEPSGSSDALAGTLSPHTR 394
+RIEAQG+YL+KIIEEQ L L P + +G SD T +P +
Sbjct: 129 LRIEAQGKYLKKIIEEQQRLSGVL-------------GEPSAPVTGDSD--PATPAPTSE 173
Query: 393 RRIDDGSNDDL----------AASQDSRETAQKNDCNVGQLDPNLYED 280
+ D S D + S + CN+G D + E+
Sbjct: 174 SPLQDKSGKDCGPDKSLSVDESLSSYREPLTPDSGCNIGSPDESTGEE 221
>gb|EAA42825.1| GLP_574_57226_57648 [Giardia lamblia ATCC 50803]
Length = 140
Score = 37.4 bits (85), Expect = 0.13
Identities = 24/98 (24%), Positives = 51/98 (51%)
Frame = -1
Query: 495 SEMLPLSHDKQNHPQSEPSGSSDALAGTLSPHTRRRIDDGSNDDLAASQDSRETAQKNDC 316
SEM+ S D+Q+H S S S D +GT + ++ + ++ + +D + +++++
Sbjct: 9 SEMVVESPDEQSHA-SASSSSDDYTSGTTTESNEEESEEDNEEEESEDEDEEDESEEDE- 66
Query: 315 NVGQLDPNLYEDDAGFGYDLERENDEDEESEQ*ELGSD 202
+ + YE++ + E E +E+EESE+ E +
Sbjct: 67 --DEEEEEEYEEE-----EEEEEEEEEEESEEEETSEE 97
>gb|AAM78548.1|AF520617_1 cyclin E [Caenorhabditis briggsae]
Length = 518
Score = 37.0 bits (84), Expect = 0.18
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1
Query: 381 DGSNDDLAASQDSRETAQKNDCNVGQLDPNLYEDDAGFGYDLERENDEDEESEQ*E 214
DGS+D A S++SRET Q ++ + + D ++ +D + D E E DE EE E+ E
Sbjct: 133 DGSSDHNAESEESRETPQSDEHDGFEEDGDVEDDVSSDVNDEEDEYDEYEEDEETE 188
>ref|NP_011537.1| Mid-Two Like 1; Mtl1p [Saccharomyces cerevisiae]
gi|1723652|sp|P53214|YG1F_YEAST HYPOTHETICAL 57.5 KD
PROTEIN IN VMA7-RPS25A INTERGENIC REGION
gi|2132585|pir||S64314 probable membrane protein YGR023w
- yeast (Saccharomyces cerevisiae)
gi|1322994|emb|CAA97006.1| ORF YGR023w [Saccharomyces
cerevisiae]
Length = 551
Score = 37.0 bits (84), Expect = 0.18
Identities = 33/118 (27%), Positives = 61/118 (50%), Gaps = 6/118 (5%)
Frame = +2
Query: 53 SYNRENNASISTLPVYKWNA*SIIYKSMTGISTRKVNTLDITSET------SVYLQSEPS 214
+++ E+++S+ + + + S +Y + S+ ++ ++TS + S L S S
Sbjct: 180 TFSSESSSSLISSSISTSVSTSSVYVPSSSTSSPPSSSSELTSSSYSSSSSSSTLFSYSS 239
Query: 215 SYCSLSSSSSFSLSKSYPNPASSSYKFGSN*PTLQSFFCAVSLESWEAAKSSFEPSSI 388
S+ S SSSSS S S S + +SSS F + + S + + S S+ ++ SS SSI
Sbjct: 240 SFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFSSSSSSNPTSSI 297
Score = 31.6 bits (70), Expect = 7.4
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 3/156 (1%)
Frame = +2
Query: 74 ASISTLPVYKWNA*SIIYKSMTGISTRKVNTLDITSETSVYLQSEPSSYCSLSSSSSFSL 253
+S S+LP + + S S T +ST ++L I++ +S + S SS +SSS S S+
Sbjct: 142 SSSSSLPTFTVASTSSTVASST-LSTS--SSLVISTSSSTFTFSSESSSSLISSSISTSV 198
Query: 254 SKS---YPNPASSSYKFGSN*PTLQSFFCAVSLESWEAAKSSFEPSSILRRVCGDKVPAR 424
S S P+ ++SS S+ T S+ + S + + SSF SS +
Sbjct: 199 STSSVYVPSSSTSSPPSSSSELTSSSYSSSSSSSTLFSYSSSFSSSS-----SSSSSSSS 253
Query: 425 ASLDPEGSD*G*FCLSCDSGSISETVKVLPNVGCSS 532
+S S F LS S S + P+ SS
Sbjct: 254 SSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFSSSS 289
>ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain containing protein
[Caenorhabditis elegans] gi|7504031|pir||T21064
hypothetical protein F53B7.5 - Caenorhabditis elegans
gi|3876064|emb|CAA96634.1| Hypothetical protein F53B7.5
[Caenorhabditis elegans] gi|3877441|emb|CAA96654.1|
Hypothetical protein F53B7.5 [Caenorhabditis elegans]
Length = 2761
Score = 36.6 bits (83), Expect = 0.23
Identities = 48/169 (28%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Frame = +2
Query: 128 KSMTGISTRKVNTLDITSETSVYLQSEPSSYCSLSSSSSFSLSKSYPNPASSSYKFGSN* 307
+S+T S+ LD++S S +S+ S+ SSS S S S +PA+++ + GS+
Sbjct: 296 ESVTSDSSDSTTPLDVSSSPSESTESQSSTPSDASSSESASSS----SPAATTEESGSST 351
Query: 308 PTLQSFFCAVSLES-----------------WEAAKSSFEPSSILRRVCGDKV-PARASL 433
+ S S ES E + SS EPS G P+ +S
Sbjct: 352 DAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSST 411
Query: 434 DPEGSD*G*FC----LSCDSGSISETVKVLPNVGCSSMIFCKYWP*ASI 568
+P GS S DSGS SE G SS F P +S+
Sbjct: 412 EPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSV 460
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,065,220
Number of Sequences: 1393205
Number of extensions: 10362809
Number of successful extensions: 44294
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 35714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40924
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
