Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003341A_C01 KMC003341A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171642.1| hypothetical protein; protein id: At1g01350.1 [... 137 9e-32
ref|NP_196260.1| putative protein; protein id: At5g06420.1, supp... 136 2e-31
gb|AAM97072.1| putative protein [Arabidopsis thaliana] gi|231980... 135 3e-31
dbj|BAC42988.1| unknown protein [Arabidopsis thaliana] 134 8e-31
pir||T10542 hypothetical protein F3I3.40 - Arabidopsis thaliana ... 110 9e-24
>ref|NP_171642.1| hypothetical protein; protein id: At1g01350.1 [Arabidopsis
thaliana]
Length = 586
Score = 137 bits (345), Expect = 9e-32
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = -3
Query: 555 EEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQ 376
+ED+++LPFACFICR+PFVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A
Sbjct: 267 DEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAH 326
Query: 375 EIRKKMAED 349
EI+K+MAE+
Sbjct: 327 EIKKRMAEE 335
>ref|NP_196260.1| putative protein; protein id: At5g06420.1, supported by cDNA: 3542.
[Arabidopsis thaliana] gi|9758422|dbj|BAB08964.1|
contains similarity to zinc finger
protein~gene_id:MHF15.6 [Arabidopsis thaliana]
gi|21618279|gb|AAM67329.1| unknown [Arabidopsis
thaliana]
Length = 378
Score = 136 bits (342), Expect = 2e-31
Identities = 55/69 (79%), Positives = 65/69 (93%)
Frame = -3
Query: 555 EEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQ 376
+ED+++LPFACFICR+PF+DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A
Sbjct: 302 DEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAH 361
Query: 375 EIRKKMAED 349
EI+K+MAE+
Sbjct: 362 EIKKRMAEE 370
>gb|AAM97072.1| putative protein [Arabidopsis thaliana] gi|23198042|gb|AAN15548.1|
putative protein [Arabidopsis thaliana]
Length = 378
Score = 135 bits (340), Expect = 3e-31
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -3
Query: 555 EEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQ 376
+ED+++LPFACFICR PF+DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A
Sbjct: 302 DEDENALPFACFICRDPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAH 361
Query: 375 EIRKKMAED 349
EI+K+MAE+
Sbjct: 362 EIKKRMAEE 370
>dbj|BAC42988.1| unknown protein [Arabidopsis thaliana]
Length = 343
Score = 134 bits (337), Expect = 8e-31
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -3
Query: 555 EEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQ 376
+ED+++LPFACFICR+PFVDPVVTKCKHYFCEHCALK H KNKKCFVCNQPT+G FN A
Sbjct: 267 DEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKRHTKNKKCFVCNQPTMGIFNAAH 326
Query: 375 EIRKKMAED 349
EI+K+MAE+
Sbjct: 327 EIKKRMAEE 335
>pir||T10542 hypothetical protein F3I3.40 - Arabidopsis thaliana
gi|5262156|emb|CAB45785.1| putative protein [Arabidopsis
thaliana] gi|7267599|emb|CAB80911.1| putative protein
[Arabidopsis thaliana]
Length = 2322
Score = 110 bits (276), Expect = 9e-24
Identities = 44/71 (61%), Positives = 57/71 (79%)
Frame = -3
Query: 555 EEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQ 376
EEDDD+LP AC IC+ PF+DPVVT C HYFC+ CALKHH +N CFVCN+PTLG F+ A
Sbjct: 1908 EEDDDALPLACSICQNPFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAV 1967
Query: 375 EIRKKMAEDNK 343
EI++++ E+ +
Sbjct: 1968 EIKERIEEERE 1978
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,109,998
Number of Sequences: 1393205
Number of extensions: 9405243
Number of successful extensions: 21692
Number of sequences better than 10.0: 784
Number of HSP's better than 10.0 without gapping: 20986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21658
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
