Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003330A_C01 KMC003330A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96739 hypothetical protein F14O23.9 [imported] - Arabidops... 52 4e-06
ref|NP_565023.1| RIBOSOMAL PROTEIN, putative; protein id: At1g71... 52 4e-06
gb|AAK82558.1| At1g71710/F14O23_9 [Arabidopsis thaliana] 52 4e-06
gb|AAG51823.1|AC016163_12 putative inositol polyphosphate phosph... 52 4e-06
dbj|BAA99519.1| P0489A01.10 [Oryza sativa (japonica cultivar-gro... 47 7e-05
>pir||D96739 hypothetical protein F14O23.9 [imported] - Arabidopsis thaliana
gi|7239498|gb|AAF43224.1|AC012654_8 Contains similarity
to the inositol-1,4,5-trisphosphate 5-Phosphatase from
Arabidopsis thaliana gi|6117853
Length = 670
Score = 51.6 bits (122), Expect = 4e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -2
Query: 460 ATYLAEVEVFSPRKLQRALTFTDAEIENEEIM 365
A Y+AEVEVFS RKLQRALTFTDAEIE+E ++
Sbjct: 635 AIYMAEVEVFSARKLQRALTFTDAEIEDEGLV 666
>ref|NP_565023.1| RIBOSOMAL PROTEIN, putative; protein id: At1g71710.1, supported by
cDNA: gi_15081806 [Arabidopsis thaliana]
gi|24111401|gb|AAN46835.1| At1g71710/F14O23_9
[Arabidopsis thaliana]
Length = 664
Score = 51.6 bits (122), Expect = 4e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -2
Query: 460 ATYLAEVEVFSPRKLQRALTFTDAEIENEEIM 365
A Y+AEVEVFS RKLQRALTFTDAEIE+E ++
Sbjct: 629 AIYMAEVEVFSARKLQRALTFTDAEIEDEGLV 660
>gb|AAK82558.1| At1g71710/F14O23_9 [Arabidopsis thaliana]
Length = 664
Score = 51.6 bits (122), Expect = 4e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -2
Query: 460 ATYLAEVEVFSPRKLQRALTFTDAEIENEEIM 365
A Y+AEVEVFS RKLQRALTFTDAEIE+E ++
Sbjct: 629 AIYMAEVEVFSARKLQRALTFTDAEIEDEGLV 660
>gb|AAG51823.1|AC016163_12 putative inositol polyphosphate phosphatase, 5' partial; 1-2276
[Arabidopsis thaliana]
Length = 551
Score = 51.6 bits (122), Expect = 4e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -2
Query: 460 ATYLAEVEVFSPRKLQRALTFTDAEIENEEIM 365
A Y+AEVEVFS RKLQRALTFTDAEIE+E ++
Sbjct: 516 AIYMAEVEVFSARKLQRALTFTDAEIEDEGLV 547
>dbj|BAA99519.1| P0489A01.10 [Oryza sativa (japonica cultivar-group)]
Length = 612
Score = 47.4 bits (111), Expect = 7e-05
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 460 ATYLAEVEVFSPRKLQRALTFTDAEIE 380
ATY AEVEVFS RKLQRALT TDAE+E
Sbjct: 572 ATYAAEVEVFSSRKLQRALTLTDAEVE 598
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,998,998
Number of Sequences: 1393205
Number of extensions: 6928980
Number of successful extensions: 13535
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13533
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
