Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003320A_C01 KMC003320A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06474 pore protein 24K chain - garden pea gi|2764574|emb|C... 105 3e-22
dbj|BAC43078.1| putative pore protein [Arabidopsis thaliana] 92 4e-18
ref|NP_175131.1| hypothetical protein; protein id: At1g45170.1 [... 92 4e-18
dbj|BAB09198.1| gb|AAF69166.1~gene_id:MBD2.16~similar to unknown... 88 5e-17
gb|AAK96838.1| Unknown protein [Arabidopsis thaliana] 88 5e-17
>pir||T06474 pore protein 24K chain - garden pea gi|2764574|emb|CAA04468.1| pore
protein of 24 kD (OEP24) [Pisum sativum]
Length = 213
Score = 105 bits (262), Expect = 3e-22
Identities = 51/65 (78%), Positives = 58/65 (88%)
Frame = -2
Query: 480 FAVSRRVYGDDSFGASYKTSSKVLGLEWSRNSQPTGCFKIVASVNLAEEAKIPQLSAETT 301
FAVS +VYGDDS ASY+TSSKVLGLEW+RNS+ TGCFK+VASVNLAEE KIP+LS E+T
Sbjct: 149 FAVSGKVYGDDSLKASYQTSSKVLGLEWTRNSKQTGCFKVVASVNLAEEKKIPKLSVEST 208
Query: 300 WNFEM 286
NFEM
Sbjct: 209 LNFEM 213
>dbj|BAC43078.1| putative pore protein [Arabidopsis thaliana]
Length = 68
Score = 91.7 bits (226), Expect = 4e-18
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = -2
Query: 480 FAVSRRVYGDDSFGASYKTSSKVLGLEWSRNSQPTGCFKIVASVNLAEEAKIPQLSAETT 301
FA+S ++YG D+ A+Y+TSSK+LGLEWS NS+ TG FK+ AS+NLAEE K P+L+AETT
Sbjct: 4 FAISHKLYGGDNLKATYQTSSKMLGLEWSNNSKSTGSFKVCASMNLAEELKPPKLTAETT 63
Query: 300 WNFEM 286
WN E+
Sbjct: 64 WNLEL 68
>ref|NP_175131.1| hypothetical protein; protein id: At1g45170.1 [Arabidopsis
thaliana] gi|25340365|pir||A96510 protein F27F5.25
[imported] - Arabidopsis thaliana
gi|7767669|gb|AAF69166.1|AC007915_18 F27F5.25
[Arabidopsis thaliana]
Length = 212
Score = 91.7 bits (226), Expect = 4e-18
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = -2
Query: 480 FAVSRRVYGDDSFGASYKTSSKVLGLEWSRNSQPTGCFKIVASVNLAEEAKIPQLSAETT 301
FA+S ++YG D+ A+Y+TSSK+LGLEWS NS+ TG FK+ AS+NLAEE K P+L+AETT
Sbjct: 148 FAISHKLYGGDNLKATYQTSSKMLGLEWSNNSKSTGSFKVCASMNLAEELKPPKLTAETT 207
Query: 300 WNFEM 286
WN E+
Sbjct: 208 WNLEL 212
>dbj|BAB09198.1| gb|AAF69166.1~gene_id:MBD2.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 211
Score = 87.8 bits (216), Expect = 5e-17
Identities = 42/65 (64%), Positives = 54/65 (82%)
Frame = -2
Query: 480 FAVSRRVYGDDSFGASYKTSSKVLGLEWSRNSQPTGCFKIVASVNLAEEAKIPQLSAETT 301
FAVSRR Y D+ A+Y+TSSK+LG+EWSRN++ +G FK+ ASVNLA+E K P+L+AETT
Sbjct: 148 FAVSRRFYSGDNVRATYQTSSKLLGMEWSRNNKASG-FKVCASVNLADELKTPKLTAETT 206
Query: 300 WNFEM 286
WN EM
Sbjct: 207 WNLEM 211
>gb|AAK96838.1| Unknown protein [Arabidopsis thaliana]
Length = 213
Score = 87.8 bits (216), Expect = 5e-17
Identities = 42/65 (64%), Positives = 54/65 (82%)
Frame = -2
Query: 480 FAVSRRVYGDDSFGASYKTSSKVLGLEWSRNSQPTGCFKIVASVNLAEEAKIPQLSAETT 301
FAVSRR Y D+ A+Y+TSSK+LG+EWSRN++ +G FK+ ASVNLA+E K P+L+AETT
Sbjct: 150 FAVSRRFYSGDNVRATYQTSSKLLGMEWSRNNKASG-FKVCASVNLADELKTPKLTAETT 208
Query: 300 WNFEM 286
WN EM
Sbjct: 209 WNLEM 213
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,628,352
Number of Sequences: 1393205
Number of extensions: 9669129
Number of successful extensions: 24133
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24117
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
