Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003318A_C01 KMC003318A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC58855.1| envelope glycoprotein [Human immunodeficiency vir... 34 1.5
gb|AAC58857.1| envelope glycoprotein [Human immunodeficiency vir... 34 1.5
gb|AAC59284.1| envelope glycoprotein [Human immunodeficiency vir... 33 2.0
gb|AAC40629.1| envelope glycoprotein [Human immunodeficiency vir... 33 3.4
gb|EAA05163.1| agCP7053 [Anopheles gambiae str. PEST] 32 7.7
>gb|AAC58855.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 859
Score = 33.9 bits (76), Expect = 1.5
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +3
Query: 27 LKGKLTSRQMLIEEANITSN*RHSRISSKSILIQHG*RMKCSYFRVIPNYNPKFRIHIG 203
L G L ++++I N T N +K+I++Q + + R PNYN K RIHIG
Sbjct: 267 LNGSLAEKEVVIRSENFTDN-------AKTIIVQLNESVAINCTR--PNYNVKGRIHIG 316
>gb|AAC58857.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 403
Score = 33.9 bits (76), Expect = 1.5
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +3
Query: 27 LKGKLTSRQMLIEEANITSN*RHSRISSKSILIQHG*RMKCSYFRVIPNYNPKFRIHIG 203
L G L ++++I N T N +K+I++Q + + R PNYN K RIHIG
Sbjct: 147 LNGSLAEKEVVIRSENFTDN-------AKTIIVQLNESVAINCTR--PNYNVKGRIHIG 196
>gb|AAC59284.1| envelope glycoprotein [Human immunodeficiency virus type 1]
gi|2384517|gb|AAC59285.1| envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 218
Score = 33.5 bits (75), Expect = 2.0
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 27 LKGKLTSRQMLIEEANITSN*RHSRISSKSILIQ--HG*RMKCSYFRVIPNYN--PKFRI 194
L G L ++++ ANIT+N +K+I++Q H + C+ PNYN + RI
Sbjct: 4 LNGSLAEEEVVLRSANITNN-------AKTIIVQLKHSVEINCTR----PNYNETKRIRI 52
Query: 195 HIGFKHIINRVSRSISM 245
H G+ V + ++M
Sbjct: 53 HRGYGRSFVTVRKLVNM 69
>gb|AAC40629.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 220
Score = 32.7 bits (73), Expect = 3.4
Identities = 22/64 (34%), Positives = 34/64 (52%), Gaps = 4/64 (6%)
Frame = +3
Query: 27 LKGKLTSRQMLIEEANITSN*RHSRISSKSILIQ--HG*RMKCSYFRVIPNYN--PKFRI 194
L G L +++I ANIT+N +K+I++Q H + C+ PNYN + RI
Sbjct: 4 LNGSLAEEEVVIRSANITNN-------AKTIIVQLKHSVEINCTR----PNYNETKRIRI 52
Query: 195 HIGF 206
H G+
Sbjct: 53 HRGY 56
>gb|EAA05163.1| agCP7053 [Anopheles gambiae str. PEST]
Length = 390
Score = 31.6 bits (70), Expect = 7.7
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 6/69 (8%)
Frame = -1
Query: 399 LKTLACNPWEI---FWFPWVLHLLTNHG*D---IGESHPIITLSLFPCPFFLSVATFTLR 238
++ L PW I FW P +L+L+ HG G + S +L +A
Sbjct: 186 VENLTRTPWWIVPAFWIPAILYLIVRHGAQQVATGRGFASASESFRTVELYLHLAIGAFA 245
Query: 237 WTLILY*LY 211
WTL+ Y L+
Sbjct: 246 WTLLEYSLH 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,376,006
Number of Sequences: 1393205
Number of extensions: 10600221
Number of successful extensions: 22994
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22983
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
