Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003312A_C01 KMC003312A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN31713.1| putative coronatine-insensitive 1 [Glycine max] 155 2e-37
ref|NP_565919.1| coronatine-insensitive 1 (COI1), AtFBL2; protei... 120 1e-26
dbj|BAB84399.1| P0529E05.15 [Oryza sativa (japonica cultivar-gro... 102 3e-21
ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; ... 44 0.001
gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana] 40 0.024
>gb|AAN31713.1| putative coronatine-insensitive 1 [Glycine max]
Length = 237
Score = 155 bits (393), Expect = 2e-37
Identities = 75/98 (76%), Positives = 84/98 (85%), Gaps = 2/98 (2%)
Frame = -1
Query: 550 IRGCSFFSEYALAIAATRLKSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVV-- 377
+RGC FFSE ALA+AAT+L SLRYLWVQGYG SPSGRDLL MARP+WNIELIPSR+V
Sbjct: 136 MRGCLFFSERALAVAATQLTSLRYLWVQGYGVSPSGRDLLVMARPFWNIELIPSRKVATN 195
Query: 376 VNHEEPIVQEHPAHILAYYSLAGPRTDFPDTVIPLDPA 263
N +E +V EHPAHILAYYSLAG R+DFPDTV+PLD A
Sbjct: 196 TNPDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLDTA 233
>ref|NP_565919.1| coronatine-insensitive 1 (COI1), AtFBL2; protein id: At2g39940.1,
supported by cDNA: gi_15010647, supported by cDNA:
gi_3158393 [Arabidopsis thaliana]
gi|25352267|pir||T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana
gi|2088647|gb|AAB95279.1| coronatine-insensitive 1
(COI1), AtFBL2 [Arabidopsis thaliana]
gi|3158394|gb|AAC17498.1| LRR-containing F-box protein
[Arabidopsis thaliana] gi|15010648|gb|AAK73983.1|
At2g39940/T28M21.10 [Arabidopsis thaliana]
gi|22137082|gb|AAM91386.1| At2g39940/T28M21.10
[Arabidopsis thaliana]
Length = 592
Score = 120 bits (301), Expect = 1e-26
Identities = 65/92 (70%), Positives = 73/92 (78%), Gaps = 2/92 (2%)
Frame = -1
Query: 550 IRGCSFFSEYALAIAATRLKSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRV-VV 374
+RGC F SE A+A A T+L SLRYLWVQGY AS +G+DL+ MARPYWNIELIPSRRV V
Sbjct: 495 MRGCCF-SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
Query: 373 NHEEPIVQ-EHPAHILAYYSLAGPRTDFPDTV 281
N + I + EHPAHILAYYSLAG RTD P TV
Sbjct: 554 NQQGEIREMEHPAHILAYYSLAGQRTDCPTTV 585
>dbj|BAB84399.1| P0529E05.15 [Oryza sativa (japonica cultivar-group)]
Length = 630
Score = 102 bits (254), Expect = 3e-21
Identities = 56/100 (56%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Frame = -1
Query: 550 IRGCSFFSEYALAIAATRLKSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVN 371
+R C F SE AL++A ++ SLRY+WVQGY AS +G DLL MARP+WNIE P N
Sbjct: 533 LRSCCF-SERALSLAVLQMPSLRYIWVQGYRASQTGLDLLLMARPFWNIEFTPPSPESFN 591
Query: 370 H----EEPIVQEHPAHILAYYSLAGPRTDFPDTVIPLDPA 263
H EP V H A +LAYYSLAG R+D P VIPL PA
Sbjct: 592 HMTEDGEPCVDSH-AQVLAYYSLAGRRSDCPQWVIPLHPA 630
>ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; protein id:
At3g62980.1, supported by cDNA: gi_11935208, supported
by cDNA: gi_2352493 [Arabidopsis thaliana]
gi|11282337|pir||T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana
gi|2352492|gb|AAB69175.1| transport inhibitor response 1
[Arabidopsis thaliana] gi|2352494|gb|AAB69176.1|
transport inhibitor response 1 [Arabidopsis thaliana]
gi|7573427|emb|CAB87743.1| transport inhibitor response
1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
Length = 594
Score = 44.3 bits (103), Expect = 0.001
Identities = 30/94 (31%), Positives = 44/94 (45%)
Frame = -1
Query: 550 IRGCSFFSEYALAIAATRLKSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVN 371
IR C F + AL A++L+++R LW+ S LL P N+E+I R +
Sbjct: 488 IRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDS 546
Query: 370 HEEPIVQEHPAHILAYYSLAGPRTDFPDTVIPLD 269
E E + Y ++AGPR D P V +D
Sbjct: 547 RPESCPVE---RVFIYRTVAGPRFDMPGFVWNMD 577
>gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 39.7 bits (91), Expect = 0.024
Identities = 29/90 (32%), Positives = 42/90 (46%)
Frame = -1
Query: 550 IRGCSFFSEYALAIAATRLKSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVN 371
IR C F + AL A +L+++R LW+ S LL+ P N+E+I
Sbjct: 484 IRDCPF-GDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVIDEHPPESR 542
Query: 370 HEEPIVQEHPAHILAYYSLAGPRTDFPDTV 281
E V+ I Y ++AGPR D P+ V
Sbjct: 543 PESSPVE----RIYIYRTVAGPRMDTPEFV 568
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,671,226
Number of Sequences: 1393205
Number of extensions: 9416212
Number of successful extensions: 26104
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26079
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
