Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003309A_C01 KMC003309A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195939.1| putative protein; protein id: At5g03190.1 [Arab... 136 2e-31
ref|NP_190908.1| putative protein; protein id: At3g53400.1, supp... 134 7e-31
ref|NP_195791.1| putative protein; protein id: At5g01710.1, supp... 79 5e-14
gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thali... 59 5e-08
ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [... 59 5e-08
>ref|NP_195939.1| putative protein; protein id: At5g03190.1 [Arabidopsis thaliana]
gi|11282325|pir||T48340 hypothetical protein F15A17.220
- Arabidopsis thaliana gi|7413596|emb|CAB86086.1|
putative protein [Arabidopsis thaliana]
gi|9757770|dbj|BAB08379.1| gene_id:MOK16.10~unknown
protein [Arabidopsis thaliana]
gi|27311561|gb|AAO00746.1| putative protein [Arabidopsis
thaliana]
Length = 451
Score = 136 bits (343), Expect = 2e-31
Identities = 67/127 (52%), Positives = 84/127 (65%), Gaps = 2/127 (1%)
Frame = -3
Query: 606 LSYVKRPGVTFVYHXGLA--GEVSEAYATDGDLDPYLGEDEFDFVAWFKETVPYADFVVL 433
LSYVK+PGVTFVYH LA + L+P+ ++ FDF+AWF+ET YADFVVL
Sbjct: 334 LSYVKKPGVTFVYHPDLAENNSTGKKITPLEQLEPFPEDERFDFLAWFEETAKYADFVVL 393
Query: 432 KMNAGKVELKFLSDIFETGAICFVDELFLRCPEKGNYDKTMTQKESCIDLYQGLRSHGVY 253
KMN +VE+KFL+ + ETG IC+VDELFLRC K CI++ Q LR+ GV+
Sbjct: 394 KMNTNQVEMKFLTVLLETGVICYVDELFLRC---------SNHKSDCINMLQTLRARGVF 444
Query: 252 VHQWWGD 232
VHQWW D
Sbjct: 445 VHQWWED 451
>ref|NP_190908.1| putative protein; protein id: At3g53400.1, supported by cDNA:
gi_17528947 [Arabidopsis thaliana]
gi|11282324|pir||T45880 hypothetical protein F4P12.100 -
Arabidopsis thaliana gi|6729491|emb|CAB67647.1| putative
protein [Arabidopsis thaliana]
Length = 466
Score = 134 bits (338), Expect = 7e-31
Identities = 65/124 (52%), Positives = 80/124 (64%)
Frame = -3
Query: 603 SYVKRPGVTFVYHXGLAGEVSEAYATDGDLDPYLGEDEFDFVAWFKETVPYADFVVLKMN 424
SYVK PGVTF+YH GLA + T +P++ +D FDF+AWFKET +ADFVVLKMN
Sbjct: 353 SYVKSPGVTFIYHPGLAATKTTIANTGDHEEPFVEDDSFDFLAWFKETASFADFVVLKMN 412
Query: 423 AGKVELKFLSDIFETGAICFVDELFLRCPEKGNYDKTMTQKESCIDLYQGLRSHGVYVHQ 244
ELKFLS++ +TGAIC VDELFL C T C + + LR+ GV+VHQ
Sbjct: 413 TSDTELKFLSELIKTGAICSVDELFLHC----------TGYSDCTGIIKSLRNSGVFVHQ 462
Query: 243 WWGD 232
WW D
Sbjct: 463 WWED 466
>ref|NP_195791.1| putative protein; protein id: At5g01710.1, supported by cDNA:
gi_15810368 [Arabidopsis thaliana]
gi|11357829|pir||T48192 hypothetical protein F7A7.230 -
Arabidopsis thaliana gi|7327830|emb|CAB82287.1| putative
protein [Arabidopsis thaliana]
gi|15810369|gb|AAL07072.1| unknown protein [Arabidopsis
thaliana] gi|23296924|gb|AAN13203.1| unknown protein
[Arabidopsis thaliana] gi|24417484|gb|AAN60352.1|
unknown [Arabidopsis thaliana]
Length = 513
Score = 79.0 bits (193), Expect = 5e-14
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Frame = -3
Query: 489 FDFVAWFKETVPYADFVVLKMNAGKVELKFLSDIFETGAICFVDELFLRC---------- 340
FDF W K++V DFVV+KM+ E + + +TGAIC +DELFL C
Sbjct: 422 FDFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYNRWQRCCP 481
Query: 339 -PEKGNYDKTMTQKESCIDLYQGLRSHGVYVHQWW 238
Y+KT Q C++L+ LR GV VHQWW
Sbjct: 482 GQRSQKYNKTYNQ---CLELFNSLRQRGVLVHQWW 513
>gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thaliana]
gi|26451877|dbj|BAC43031.1| unknown protein [Arabidopsis
thaliana]
Length = 420
Score = 58.9 bits (141), Expect = 5e-08
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Frame = -3
Query: 504 LGEDEFDFVAWFKETVPYADFVVLKMNAGKVELKFLSDIFETGAICFVDELFLRCPEKGN 325
L ++ W KE V ++VV+K A VE ++ + +I VDELFL C KG
Sbjct: 329 LESEKMGMTEWLKENVKEEEYVVMKAEAEMVE-----EMMRSKSIKMVDELFLECKPKGL 383
Query: 324 --YDKTMTQKES-----CIDLYQGLRSHGVYVHQWWG 235
+ M K C+ LY LR GV VHQWWG
Sbjct: 384 GLRGRKMQSKSGRAYWECLALYGKLRDEGVAVHQWWG 420
>ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [Arabidopsis
thaliana] gi|25404192|pir||E96614 hypothetical protein
T18I24.4 [imported] - Arabidopsis thaliana
gi|12321385|gb|AAG50763.1|AC079131_8 hypothetical
protein [Arabidopsis thaliana]
Length = 420
Score = 58.9 bits (141), Expect = 5e-08
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Frame = -3
Query: 504 LGEDEFDFVAWFKETVPYADFVVLKMNAGKVELKFLSDIFETGAICFVDELFLRCPEKGN 325
L ++ W KE V ++VV+K A VE ++ + +I VDELFL C KG
Sbjct: 329 LESEKMGMTEWLKENVKEEEYVVMKAEAEMVE-----EMMRSKSIKMVDELFLECKPKGL 383
Query: 324 --YDKTMTQKES-----CIDLYQGLRSHGVYVHQWWG 235
+ M K C+ LY LR GV VHQWWG
Sbjct: 384 GLRGRKMQSKSGRAYWECLALYGKLRDEGVAVHQWWG 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,590,144
Number of Sequences: 1393205
Number of extensions: 11768760
Number of successful extensions: 30982
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30803
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
