Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003303A_C01 KMC003303A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL30075.1| BRCA1 [Sorex araneus] 36 0.41
gb|EAA05909.1| agCP14616 [Anopheles gambiae str. PEST] 34 1.2
ref|NP_348189.1| Predicted membrane protein [Clostridium acetobu... 33 3.5
gb|EAA15617.1| hypothetical protein [Plasmodium yoelii yoelii] 32 4.5
dbj|BAC07419.1| P0039H02.6 [Oryza sativa (japonica cultivar-grou... 32 4.5
>gb|AAL30075.1| BRCA1 [Sorex araneus]
Length = 903
Score = 35.8 bits (81), Expect = 0.41
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Frame = -3
Query: 553 HLHLMFSINILSPTPRPHLESVSLLDLDACNSGEIAKSSKYHDQLKDLMS----FDEDLK 386
H+H + + +P+P H+E L +D+C+SGE K + DQ+ S ED +
Sbjct: 332 HIHALELVVSKNPSPHNHME----LQIDSCSSGEEVKEKNF-DQIPVRHSKKPQLTEDKE 386
Query: 385 DSTKATLSNQGND------ASDVMMQLNM 317
ST SN+ N+ + D+ +LN+
Sbjct: 387 LSTGTINSNEQNEQINTRISGDIFSELNL 415
>gb|EAA05909.1| agCP14616 [Anopheles gambiae str. PEST]
Length = 606
Score = 34.3 bits (77), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -3
Query: 517 PTPRPHLESVSLLDLDACNSGEIAKSSKYHDQLKDLMSFDEDL 389
PT H+E ++ L + ACN A+S +Y DQ KD+ ++L
Sbjct: 130 PTINVHIEILNQLGIMACNLSNFAESKQYLDQAKDIYCETKEL 172
>ref|NP_348189.1| Predicted membrane protein [Clostridium acetobutylicum]
gi|25378536|pir||F97092 probable membrane protein
[imported] - Clostridium acetobutylicum
gi|15024514|gb|AAK79529.1|AE007666_4 Predicted membrane
protein [Clostridium acetobutylicum]
Length = 363
Score = 32.7 bits (73), Expect = 3.5
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 5/58 (8%)
Frame = -3
Query: 463 NSGEIAKSSKYHDQLKDLMSFDEDLKDSTKATLSNQG-----NDASDVMMQLNMGFAE 305
NSGE + S K + LM+F LKD TK +SN G D ++++ ++ + E
Sbjct: 87 NSGEFSFSIKNKSKDAMLMNFVSQLKDGTKVAVSNSGFVMLKQDGTNLVKRVRTSYGE 144
>gb|EAA15617.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 525
Score = 32.3 bits (72), Expect = 4.5
Identities = 20/68 (29%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
Frame = -1
Query: 198 MQIISCYCHGHNLGVVKRKIQNNVQ*----LVCKFCHQHRVFDITKTLYNY*YLYDHQPI 31
+ I+ Y H H L + K NN + CK+CH H +I LY L+
Sbjct: 114 LYILQKYLHMHGLCIPCYKFTNNDHSCEYNIRCKWCHHHTHLNINSVLYPNKILHAKNKC 173
Query: 30 NYINYFKK 7
N +F K
Sbjct: 174 NVCTHFLK 181
>dbj|BAC07419.1| P0039H02.6 [Oryza sativa (japonica cultivar-group)]
gi|23617100|dbj|BAC20783.1| contains ESTs
AU100950(C61086),C28439(C61086)~helicase-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 32.3 bits (72), Expect = 4.5
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = -3
Query: 535 SINILSPTPR----PHLESVSLLDLDACNSGEIAKSSKYHDQLKDLMSFDEDLKDSTKAT 368
S ++L+PTP + + S L + + +A+SS + D D+ SF +D D
Sbjct: 276 SSSLLNPTPSFETTGDVPATSSLQTELA-ADHLARSSNFDD---DMDSFMDDDTDDEHYM 331
Query: 367 LSNQGNDASDVMMQLNMGFAEAPTSNFLHPESSVCS 260
+ G+D D M+Q + +AP+S+ P V S
Sbjct: 332 FAGLGDDEDDEMVQSDDDDTQAPSSSIPDPFDFVYS 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,789,250
Number of Sequences: 1393205
Number of extensions: 9362284
Number of successful extensions: 20905
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
