Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003301A_C01 KMC003301A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191247.1| putative protein; protein id: At3g56880.1, supp... 116 2e-25
ref|NP_181634.1| unknown protein; protein id: At2g41010.1, suppo... 100 2e-20
dbj|BAA89548.1| unnamed protein product [Oryza sativa (japonica ... 60 2e-08
dbj|BAC10346.1| contains EST AU183230(E51202)~unknown protein [O... 60 3e-08
ref|NP_492875.2| pre-mRNA splicing SR protein related RSR-1 (68.... 56 4e-07
>ref|NP_191247.1| putative protein; protein id: At3g56880.1, supported by cDNA:
39584., supported by cDNA: gi_15028354 [Arabidopsis
thaliana] gi|11289614|pir||T51276 hypothetical protein
T8M16_210 - Arabidopsis thaliana
gi|9663007|emb|CAC00751.1| putative protein [Arabidopsis
thaliana] gi|15028355|gb|AAK76654.1| unknown protein
[Arabidopsis thaliana] gi|24030447|gb|AAN41377.1|
unknown protein [Arabidopsis thaliana]
Length = 245
Score = 116 bits (290), Expect = 2e-25
Identities = 75/163 (46%), Positives = 106/163 (65%), Gaps = 13/163 (7%)
Frame = +1
Query: 127 AENLASIEPWMYRPSSVADSWL-ADYIARDAETLTKALQKSLSNDVDAA-ISPLFNLVRT 300
+E LAS++PW +R + DSWL +D + D++ L KAL +S+S +++ +SP +
Sbjct: 4 SEGLASVDPWSFRQNFNIDSWLLSDSFSHDSDILAKALHRSISTSTESSPLSPSSFFDSS 63
Query: 301 DAAVSPALPATPTVSSLS-GSDQDSQQP------KRNR---VSGGRVSKRKSRAS-KRSQ 447
AAV + P T +S++S GSD + KR R VSGG+ +KR+SR S K+SQ
Sbjct: 64 TAAVDFSPPQT--LSNVSFGSDPEIPAASALGLGKRKRGPGVSGGKQTKRRSRVSNKKSQ 121
Query: 448 TTFITADPANFRQMVQQITGARFTGSLPAPMAPVVRPEPLKAA 576
TTFITAD ANFRQMVQQ+TGA+F GS + AP+V+PEP + A
Sbjct: 122 TTFITADAANFRQMVQQVTGAKFLGSSNSIFAPIVKPEPHRLA 164
>ref|NP_181634.1| unknown protein; protein id: At2g41010.1, supported by cDNA:
gi_13272432 [Arabidopsis thaliana]
gi|7487625|pir||T02118 hypothetical protein At2g41010
[imported] - Arabidopsis thaliana
gi|3402716|gb|AAD12010.1| unknown protein [Arabidopsis
thaliana] gi|13272433|gb|AAK17155.1|AF325087_1 unknown
protein [Arabidopsis thaliana]
gi|26449325|dbj|BAC41790.1| unknown protein [Arabidopsis
thaliana]
Length = 238
Score = 99.8 bits (247), Expect = 2e-20
Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 8/156 (5%)
Frame = +1
Query: 127 AENLASIEPWMYRPSSVADSWL-ADYIARDAETLTKALQKSLSNDVDAAISPLFNLVRTD 303
+E LAS++ W+YR DSWL +D + D + L +AL +++ ++P +
Sbjct: 4 SEGLASVDSWLYRQGFNVDSWLLSDTFSHDNDLLARALHTTVT--APHTLTPSSAFFDSS 61
Query: 304 AAVSPALPAT--PTVSSLSGSDQDSQQPKRNR---VSGGRVSKRKSRASKRSQTTFITAD 468
A P+ T TVS S + KR R ++ G+ +KR++RASK+SQTTFITAD
Sbjct: 62 AVSHPSSTNTLSSTVSGASDPEIIGGGAKRKRNCLLTDGKAAKRRARASKKSQTTFITAD 121
Query: 469 PANFRQMVQQITGARF--TGSLPAPMAPVVRPEPLK 570
P+NFRQMVQQ+TGA++ S P+V+PEPL+
Sbjct: 122 PSNFRQMVQQVTGAKYIDDSSSFGIFDPIVKPEPLR 157
>dbj|BAA89548.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 362
Score = 60.5 bits (145), Expect = 2e-08
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Frame = +1
Query: 223 LTKALQKSLSNDVDAAISPLFNLVRTDAAVSPALPATPTVSSLSGSDQDSQQPKRNRVS- 399
L+ A +++ + A+++P +A SP + T +S S + + R +
Sbjct: 155 LSPAADDAITAALWASMAPSSASSYCGSAASPTPSTSTTTTSSSAASAEILAGGGARAAT 214
Query: 400 --GGRVSKRKSRASKRSQTTFITADPANFRQMVQQITGARFTGS 525
GRVSKRK R S+R+ TT+ITADPA+FR+MVQ+ITG G+
Sbjct: 215 RPSGRVSKRKPRPSRRAHTTYITADPADFRRMVQEITGFPVPGA 258
>dbj|BAC10346.1| contains EST AU183230(E51202)~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 218
Score = 59.7 bits (143), Expect = 3e-08
Identities = 41/101 (40%), Positives = 50/101 (48%)
Frame = +1
Query: 289 LVRTDAAVSPALPATPTVSSLSGSDQDSQQPKRNRVSGGRVSKRKSRASKRSQTTFITAD 468
LV A SPA PA + QQ +GGR KR+SRASKR+ TT+I+ D
Sbjct: 80 LVADSARPSPAGPAR----------RHQQQQLGLGPAGGRAGKRRSRASKRAPTTYISTD 129
Query: 469 PANFRQMVQQITGARFTGSLPAPMAPVVRPEPLKAAVGAGG 591
PANFR MVQ +TG V+ +P A GA G
Sbjct: 130 PANFRLMVQHVTG--------------VQADPASLADGAAG 156
>ref|NP_492875.2| pre-mRNA splicing SR protein related RSR-1 (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 55.8 bits (133), Expect = 4e-07
Identities = 49/142 (34%), Positives = 66/142 (45%), Gaps = 2/142 (1%)
Frame = -2
Query: 586 RHRPPPSVAPVEPPAPL-APATSR*TSRR*SAAPSAGNSPGPP**KSSATASTRVTSAWR 410
R R PS + PPAP A + S+ R +PSA SP P + S + S
Sbjct: 346 RRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKRE 405
Query: 409 LS-RRRRGCASAAGSPGRSRRGWRRSESPGEQGKQRRRS*QG*KEEKSPRQRRWRVISEA 233
+ RRR SA+ SP +R RS+SP ++R S + KSP RR R S++
Sbjct: 406 IPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPS-----QSKSPAPRRRRSPSKS 460
Query: 232 P**EFRRHVLCNRRAMSPRRRR 167
P RR ++ SPRRRR
Sbjct: 461 PQAPRRRRSPSGSKSRSPRRRR 482
Score = 40.0 bits (92), Expect = 0.023
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +2
Query: 170 PPSRTHGSPIT*HVTPKLSLRRFRNHSPTTLTRRFLLFSTLSGPTPLFPLLSRRLRPS-- 343
PP+R SP P + R+ SP RR + S P RR PS
Sbjct: 407 PPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKS------PAPRRRRSPSKS 460
Query: 344 PASPAPTRTPSSRSATASPAGESPSGSHARR-SGRRRLSSRRTRRISGRWCSRSP 505
P +P R+PS + + SP+ + RR S +RR S RR R S SRSP
Sbjct: 461 PQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSP 515
Score = 35.4 bits (80), Expect = 0.56
Identities = 31/80 (38%), Positives = 36/80 (44%), Gaps = 16/80 (20%)
Frame = +2
Query: 356 APTRTPSSRSATASPAGESPSGSHARRSG-----RRRLSSRR-----------TRRISGR 487
+P +TP R+A SP G+ GS A R G RRR RR TRR R
Sbjct: 180 SPRKTPPRRNA--SPGGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPPR 237
Query: 488 WCSRSPARGLPARCRRQWRR 547
PARG R RR+ RR
Sbjct: 238 RRGSPPARGGDRRDRREDRR 257
Score = 35.0 bits (79), Expect = 0.73
Identities = 49/150 (32%), Positives = 59/150 (38%), Gaps = 13/150 (8%)
Frame = +2
Query: 170 PPSRTHGSPIT*HVTPKLSLRRFRNHSPTTLTRRFLLFSTLSGPTPLFPLLSRRLRPSPA 349
PP+R SP P RR + S + +R + P RR PS +
Sbjct: 371 PPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREI------------PPARRRRSPSAS 418
Query: 350 S--PAPTRTPS-SRSATASPAGESPSGSHARRSGRRRLSSR-----RTRRISGRWCSRSP 505
PAP R S S+S A SPS S + RRR S+ R RR SRSP
Sbjct: 419 KSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSP 478
Query: 506 AR-----GLPARCRRQWRRWFDRSH*RRRS 580
R P R + RR RS RRRS
Sbjct: 479 RRRRSPAAAPRRRQSPQRR---RSPRRRRS 505
Score = 33.1 bits (74), Expect = 2.8
Identities = 34/124 (27%), Positives = 47/124 (37%)
Frame = +2
Query: 167 PPPSRTHGSPIT*HVTPKLSLRRFRNHSPTTLTRRFLLFSTLSGPTPLFPLLSRRLRPSP 346
PPP+R SP +P + R+ SP RR S P P
Sbjct: 314 PPPARRRRSPSQ-SKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP------------- 359
Query: 347 ASPAPTRTPSSRSATASPAGESPSGSHARRSGRRRLSSRRTRRISGRWCSRSPARGLPAR 526
AP R S + + SPS S + + RRR S ++R S +P R +P
Sbjct: 360 ---APKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSR-------SPAPKREIPPA 409
Query: 527 CRRQ 538
RR+
Sbjct: 410 RRRR 413
Score = 32.0 bits (71), Expect = 6.2
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Frame = -2
Query: 454 KSSATASTRVTSAWRLSRRRRGCASAAGSPGRSRRGWRRSESPGEQ----------GKQR 305
K+ A+ + R S RRR AS + P R RR +S+SP + R
Sbjct: 288 KAIASVAARAKSG-SPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPAR 346
Query: 304 RRS*QG*KEEKSPRQRRWRVISEAP**EFRRHVLCNRRAMSPRRRR 167
RR + P +R + S++P RR ++ +PRRRR
Sbjct: 347 RRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRR 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,793,798
Number of Sequences: 1393205
Number of extensions: 13971231
Number of successful extensions: 119652
Number of sequences better than 10.0: 619
Number of HSP's better than 10.0 without gapping: 79444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114180
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
